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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 370ChIP-seq
  • 18ATAC-seq
  • 5total RNA-seq
  • 4DNase-seq
  • 1Hi-C
Assay category
  • 370DNA binding
  • 22DNA accessibility
  • 5Transcription
  • 13D chromatin structure
Target of assay
  • 229transcription factor
  • 82recombinant protein
  • 75control
  • 64histone
  • 64histone modification
  • 34broad histone mark
  • 30narrow histone mark
  • 26RNA binding protein
  • 9chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 173November, 2017
  • 55August, 2017
  • 50November, 2018
  • 46September, 2018
  • 35December, 2017
  • 15October, 2018
  • 12January, 2019
  • 8October, 2017
  • 4December, 2018
Available data
  • 398fastq
  • 396bam
  • 319bigWig
  • 278bed narrowPeak
  • 239bigBed narrowPeak
  • 14bed bed3+
  • 12bed broadPeak
  • 10bigBed broadPeak
  • 5tagAlign
  • 5tsv
Organism
  • 398Homo sapiens
Biosample type
  • 227cell line
  • 108tissue
  • 60primary cell
  • 3in vitro differentiated cells
Organ
  • 262liver
  • 77pancreas
  • 35epithelium
  • 30connective tissue
  • 27adipose tissue
  • 16blood
  • 16bodily fluid
  • 6spleen
  • 5brain
Project
  • 398AMP
Genome assembly (visualization)
  • 317hg19
  • 314GRCh38
Lab
  • 397AMP-T2D consortium
  • 1Stephen Parker, UMich
Audit category:
  • 27inconsistent control
Audit category:
  • 63missing controlled_by
Audit category:
  • 11inconsistent control read length
  • 1inconsistent assembly
  • 1inconsistent control run_type
BIOSAMPLE
ASSAY

398 results

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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
Hi-C
cell line
HepG220551
GM1287816
tissue
liver501
white adipose tissue12
subcutaneous adipose tissue9
islet of Langerhans61
pancreas7
primary cell
pancreatic endocrine cell23
pancreatic ductal cell134
pancreatic acinar cell83
pancreatic beta cell4
pancreatic alpha cell3
in vitro differentiated cells
adipocyte21
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