Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 364ChIP-seq
  • 135total RNA-seq
  • 17ATAC-seq
  • 4single cell RNA-seq
  • 3DNase-seq
  • 1Hi-C
Assay category
  • 364DNA binding
  • 139Transcription
  • 20DNA accessibility
  • 13D chromatin structure
Target of assay
  • 219transcription factor
  • 82recombinant protein
  • 75control
  • 68histone
  • 68histone modification
  • 38broad histone mark
  • 30narrow histone mark
  • 26RNA binding protein
  • 9chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 173November, 2017
  • 138August, 2017
  • 72September, 2018
  • 49November, 2018
  • 35December, 2017
  • 17October, 2018
  • 13February, 2018
  • 12January, 2019
  • 7October, 2017
  • 4December, 2018
  • 3July, 2018
  • 1June, 2018
Available data
  • 524fastq
  • 523bam
  • 445bigWig
  • 281bed narrowPeak
  • 243bigBed narrowPeak
  • 139tsv
  • 15bed broadPeak
  • 11tagAlign
  • 9bigBed broadPeak
  • 1bed bed3+
Organism
  • 518Homo sapiens
Biosample type
  • 227cell line
  • 191tissue
  • 92primary cell
  • 14in vitro differentiated cells
Organ
  • 261liver
  • 194pancreas
  • 64epithelium
  • 24connective tissue
  • 23adipose tissue
  • 16blood
  • 16bodily fluid
  • 6spleen
  • 5brain
  • 4embryo
Project
  • 524AMP
Genome assembly (visualization)
  • 442hg19
  • 439GRCh38
Lab
  • 524AMP-T2D consortium
Audit category:
  • 27inconsistent control
  • 3inconsistent ontology term
Audit category:
  • 53missing controlled_by
Audit category:
  • 11inconsistent control read length
  • 2inconsistent assembly
  • 1inconsistent control run_type
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

524 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
Hi-C
cell line
HepG220551
GM1287816
tissue
islet of Langerhans89
liver50
pancreas13
subcutaneous adipose tissue9
white adipose tissue8
primary cell
pancreatic endocrine cell23
pancreatic ductal cell1344
pancreatic acinar cell8431
pancreatic beta cell104
pancreatic alpha cell103
in vitro differentiated cells
pancreatic endoderm4
definitive endodermal cell2
embryonic stem cell2
posterior foregut2
primitive gut cell2
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego