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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 148ChIP-seq
  • 131total RNA-seq
  • 27single cell RNA-seq
  • 18ATAC-seq
  • 2DNase-seq
Assay category
  • 158Transcription
  • 148DNA binding
  • 20DNA accessibility
Target of assay
  • 67histone
  • 67histone modification
  • 56control
  • 37broad histone mark
  • 30narrow histone mark
  • 25transcription factor
  • 3RNA binding protein
  • 3other context
  • 3other post-translational modification
  • 1recombinant protein
Date released
  • 147August, 2017
  • 72September, 2018
  • 25July, 2018
  • 22November, 2017
  • 17October, 2018
  • 14February, 2018
  • 9November, 2018
  • 8December, 2017
  • 8October, 2017
  • 2January, 2019
  • 1August, 2018
  • 1June, 2018
Available data
  • 326fastq
  • 325bam
  • 269bigWig
  • 158tsv
  • 80bed narrowPeak
  • 41bigBed narrowPeak
  • 14bed bed3+
  • 10tagAlign
  • 9bed broadPeak
  • 2bigBed broadPeak
Organism
  • 320Homo sapiens
Biosample type
  • 172tissue
  • 113primary cell
  • 25cell line
  • 16in vitro differentiated cells
Organ
  • 219pancreas
  • 78epithelium
  • 43liver
  • 31connective tissue
  • 27adipose tissue
  • 6spleen
  • 5brain
  • 4embryo
  • 2blood
  • 2bodily fluid
Project
  • 326AMP
Genome assembly (visualization)
  • 270GRCh38
  • 270hg19
Lab
  • 325AMP-T2D consortium
  • 1Stephen Parker, UMich
Audit category:
  • 7inconsistent ontology term
Audit category:
  • 63missing controlled_by
Audit category:
  • 4inconsistent control read length
  • 1inconsistent assembly
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

326 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
tissue
islet of Langerhans6891
liver191
pancreas13
white adipose tissue12
subcutaneous adipose tissue9
primary cell
pancreatic ductal cell13424
pancreatic endocrine cell23
pancreatic acinar cell8443
pancreatic beta cell1024
pancreatic alpha cell1013
cell line
HepG223
GM128782
in vitro differentiated cells
pancreatic endoderm4
adipocyte2
definitive endodermal cell2
embryonic stem cell2
posterior foregut2
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