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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 240ChIP-seq
  • 23single cell RNA-seq
  • 6total RNA-seq
  • 3DNase-seq
  • 1ATAC-seq
  • 1Hi-C
Assay category
  • 240DNA binding
  • 29Transcription
  • 4DNA accessibility
  • 13D chromatin structure
Target of assay
  • 214transcription factor
  • 81recombinant protein
  • 23RNA binding protein
  • 21control
  • 9chromatin remodeller
  • 3histone
  • 3histone modification
  • 2narrow histone mark
  • 1broad histone mark
Date released
  • 151November, 2017
  • 42November, 2018
  • 27December, 2017
  • 22July, 2018
  • 15August, 2017
  • 10January, 2019
  • 4December, 2018
  • 1August, 2018
  • 1February, 2018
  • 1October, 2017
Available data
  • 274fastq
  • 272bam
  • 250bigWig
  • 205bed narrowPeak
  • 204bigBed narrowPeak
  • 29tsv
  • 13bed bed3+
  • 10bed broadPeak
  • 9bigBed broadPeak
  • 1tagAlign
Organism
  • 274Homo sapiens
Biosample type
  • 202cell line
  • 43tissue
  • 25primary cell
  • 4in vitro differentiated cells
Organ
  • 220liver
  • 25pancreas
  • 14blood
  • 14bodily fluid
  • 14epithelium
  • 9connective tissue
  • 4adipose tissue
Project
  • 274AMP
Genome assembly (visualization)
  • 248hg19
  • 245GRCh38
Lab
  • 273AMP-T2D consortium
  • 1Stephen Parker, UMich
Audit category:
  • 27inconsistent control
  • 4inconsistent ontology term
Audit category:
  • 10missing controlled_by
Audit category:
  • 7inconsistent control read length
  • 1inconsistent assembly
  • 1inconsistent control run_type
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

274 results

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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
DNase-seq
ATAC-seq
Hi-C
cell line
HepG218251
GM1287814
tissue
liver311
islet of Langerhans61
white adipose tissue4
primary cell
pancreatic acinar cell3
co-expressing pancreatic endocrine cell2
endothelial cell2
pancreatic beta cell2
pancreatic delta cell2
in vitro differentiated cells
adipocyte21
islet precursor cell1
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