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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 23single cell RNA-seq
  • 12ChIP-seq
  • 1ATAC-seq
  • 1DNase-seq
  • 1total RNA-seq
Assay category
  • 24Transcription
  • 12DNA binding
  • 2DNA accessibility
Target of assay
  • 10transcription factor
  • 1control
  • 1histone
  • 1histone modification
  • 1narrow histone mark
Date released
  • 22July, 2018
  • 12August, 2017
  • 1August, 2018
  • 1February, 2018
  • 1November, 2018
  • 1October, 2017
Available data
  • 38fastq
  • 37bam
  • 37bigWig
  • 24tsv
  • 13bed bed3+
  • 2bed broadPeak
  • 2bed narrowPeak
  • 1bigBed broadPeak
  • 1bigBed narrowPeak
Organism
  • 38Homo sapiens
Biosample type
  • 23primary cell
  • 12tissue
  • 3in vitro differentiated cells
Organ
  • 25pancreas
  • 14epithelium
  • 8connective tissue
  • 4adipose tissue
  • 1liver
Project
  • 38AMP
Genome assembly (visualization)
  • 38GRCh38
  • 38hg19
Lab
  • 37AMP-T2D consortium
  • 1Stephen Parker, UMich
Audit category:
  • 4inconsistent ontology term
Audit category:
  • 10missing controlled_by
BIOSAMPLE
ASSAY

38 results

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Clear Filters
single cell RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
primary cell
pancreatic acinar cell3
co-expressing pancreatic endocrine cell2
endothelial cell2
pancreatic beta cell2
pancreatic delta cell2
tissue
islet of Langerhans61
white adipose tissue4
liver1
in vitro differentiated cells
adipocyte2
islet precursor cell1
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