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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
single cell RNA-seq
12
ChIP-seq
1
ATAC-seq
1
DNase-seq
1
total RNA-seq
Assay category
24
Transcription
12
DNA binding
2
DNA accessibility
Target of assay
10
transcription factor
1
control
1
histone
1
histone modification
1
narrow histone mark
Date released
22
July, 2018
12
August, 2017
1
August, 2018
1
February, 2018
1
November, 2018
1
October, 2017
Available data
38
fastq
37
bam
37
bigWig
24
tsv
13
bed bed3+
2
bed broadPeak
2
bed narrowPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
38
Homo sapiens
Biosample type
23
primary cell
12
tissue
3
in vitro differentiated cells
Organ
25
pancreas
14
epithelium
8
connective tissue
4
adipose tissue
1
liver
Project
38
AMP
Genome assembly (visualization)
38
GRCh38
38
hg19
Lab
37
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
10
missing controlled_by
BIOSAMPLE
ASSAY
38 results
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single cell RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
primary cell
pancreatic acinar cell
3
co-expressing pancreatic endocrine cell
2
endothelial cell
2
pancreatic beta cell
2
pancreatic delta cell
2
+ See 7 more…
tissue
islet of Langerhans
6
1
white adipose tissue
4
liver
1
in vitro differentiated cells
adipocyte
2
islet precursor cell
1
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