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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 228ChIP-seq
  • 5total RNA-seq
  • 2DNase-seq
  • 1Hi-C
Assay category
  • 228DNA binding
  • 5Transcription
  • 2DNA accessibility
  • 13D chromatin structure
Target of assay
  • 204transcription factor
  • 81recombinant protein
  • 23RNA binding protein
  • 20control
  • 9chromatin remodeller
  • 2histone
  • 2histone modification
  • 1broad histone mark
  • 1narrow histone mark
Date released
  • 151November, 2017
  • 41November, 2018
  • 27December, 2017
  • 10January, 2019
  • 4December, 2018
  • 3August, 2017
Available data
  • 236fastq
  • 235bam
  • 213bigWig
  • 203bed narrowPeak
  • 203bigBed narrowPeak
  • 8bed broadPeak
  • 8bigBed broadPeak
  • 5tsv
  • 1tagAlign
Organism
  • 236Homo sapiens
Biosample type
  • 202cell line
  • 31tissue
  • 2primary cell
  • 1in vitro differentiated cells
Organ
  • 219liver
  • 14blood
  • 14bodily fluid
  • 1connective tissue
Project
  • 236AMP
Genome assembly (visualization)
  • 210hg19
  • 207GRCh38
Lab
  • 236AMP-T2D consortium
Audit category:
  • 27inconsistent control
Audit category:
  • 7inconsistent control read length
  • 1inconsistent assembly
  • 1inconsistent control run_type
BIOSAMPLE
ASSAY

236 results

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ChIP-seq
total RNA-seq
DNase-seq
Hi-C
cell line
HepG218251
GM1287814
tissue
liver31
primary cell
skeletal muscle myoblast11
in vitro differentiated cells
adipocyte1
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