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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 136ChIP-seq
  • 130total RNA-seq
  • 17ATAC-seq
  • 4single cell RNA-seq
  • 1DNase-seq
Assay category
  • 136DNA binding
  • 134Transcription
  • 18DNA accessibility
Target of assay
  • 66histone
  • 66histone modification
  • 55control
  • 37broad histone mark
  • 29narrow histone mark
  • 15transcription factor
  • 3RNA binding protein
  • 3other context
  • 3other post-translational modification
  • 1recombinant protein
Date released
  • 135August, 2017
  • 72September, 2018
  • 22November, 2017
  • 17October, 2018
  • 13February, 2018
  • 8December, 2017
  • 8November, 2018
  • 7October, 2017
  • 3July, 2018
  • 2January, 2019
  • 1June, 2018
Available data
  • 288bam
  • 288fastq
  • 232bigWig
  • 134tsv
  • 78bed narrowPeak
  • 40bigBed narrowPeak
  • 10tagAlign
  • 7bed broadPeak
  • 1bed bed3+
  • 1bigBed broadPeak
Organism
  • 282Homo sapiens
Biosample type
  • 160tissue
  • 90primary cell
  • 25cell line
  • 13in vitro differentiated cells
Organ
  • 194pancreas
  • 64epithelium
  • 42liver
  • 23adipose tissue
  • 23connective tissue
  • 6spleen
  • 5brain
  • 4embryo
  • 2blood
  • 2bodily fluid
Project
  • 288AMP
Genome assembly (visualization)
  • 232GRCh38
  • 232hg19
Lab
  • 288AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 53missing controlled_by
Audit category:
  • 4inconsistent control read length
  • 1inconsistent assembly
BIOSAMPLE
ASSAY

288 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
tissue
islet of Langerhans89
liver19
pancreas13
subcutaneous adipose tissue9
white adipose tissue8
primary cell
pancreatic endocrine cell23
pancreatic ductal cell1344
pancreatic acinar cell8431
pancreatic beta cell104
pancreatic alpha cell103
cell line
HepG223
GM128782
in vitro differentiated cells
pancreatic endoderm4
definitive endodermal cell2
embryonic stem cell2
posterior foregut2
primitive gut cell2
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