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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 338ChIP-seq
  • 136total RNA-seq
  • 27single cell RNA-seq
  • 18ATAC-seq
  • 4DNase-seq
  • 1Hi-C
Assay category
  • 338DNA binding
  • 163Transcription
  • 22DNA accessibility
  • 13D chromatin structure
Target of assay
  • 229transcription factor
  • 82recombinant protein
  • 76control
  • 69histone
  • 69histone modification
  • broad histone mark
  • 31narrow histone mark
  • 26RNA binding protein
  • 9chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 172November, 2017
  • 133August, 2017
  • 55September, 2018
  • 50November, 2018
  • 35December, 2017
  • 25July, 2018
  • 17October, 2018
  • 14February, 2018
  • 12January, 2019
  • 5October, 2017
  • 4December, 2018
  • 1August, 2018
  • 1June, 2018
Available data
  • 524fastq
  • 522bam
  • 444bigWig
  • 249bed narrowPeak
  • 228bigBed narrowPeak
  • 163tsv
  • 14bed bed3+
  • 11bed broadPeak
  • 9bigBed broadPeak
  • 3tagAlign
Organism
  • 522Homo sapiens
Biosample type
  • 226cell line
  • 187tissue
  • 94primary cell
  • 17in vitro differentiated cells
Organ
  • 256liver
  • 190pancreas
  • 68epithelium
  • 32connective tissue
  • 27adipose tissue
  • 16blood
  • 16bodily fluid
  • 6spleen
  • 4embryo
  • 2brain
Project
  • 524AMP
Genome assembly (visualization)
  • 442hg19
  • 439GRCh38
Lab
  • 523AMP-T2D consortium
  • 1Stephen Parker, UMich
Audit category:
  • 27inconsistent control
  • 7inconsistent ontology term
Audit category:
  • 42missing controlled_by
Audit category:
  • 7inconsistent control read length
  • 1inconsistent assembly
  • 1inconsistent control run_type
target.investigated_as!
  • broad histone mark
BIOSAMPLE
ASSAY

524 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
cell line
HepG220451
GM1287816
tissue
islet of Langerhans6891
liver451
white adipose tissue12
subcutaneous adipose tissue9
spleen6
primary cell
pancreatic ductal cell7424
pancreatic beta cell1024
pancreatic acinar cell4443
pancreatic alpha cell1013
pancreatic endocrine cell12
in vitro differentiated cells
pancreatic endoderm4
adipocyte21
definitive endodermal cell2
embryonic stem cell2
posterior foregut2
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