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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 307ChIP-seq
  • 136total RNA-seq
  • 27single cell RNA-seq
  • 18ATAC-seq
  • 4DNase-seq
  • 1Hi-C
Assay category
  • 307DNA binding
  • 163Transcription
  • 22DNA accessibility
  • 13D chromatin structure
Target of assay
  • 229transcription factor
  • 82recombinant protein
  • 76control
  • 69histone
  • histone modification
  • 38broad histone mark
  • 31narrow histone mark
  • 26RNA binding protein
  • 9chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 172November, 2017
  • 117August, 2017
  • 50November, 2018
  • 40September, 2018
  • 35December, 2017
  • 25July, 2018
  • 17October, 2018
  • 14February, 2018
  • 12January, 2019
  • 5October, 2017
  • 4December, 2018
  • 1August, 2018
  • 1June, 2018
Available data
  • 493fastq
  • 491bam
  • 413bigWig
  • 227bed narrowPeak
  • 223bigBed narrowPeak
  • 163tsv
  • 13bed bed3+
  • 10bed broadPeak
  • 9bigBed broadPeak
  • 2tagAlign
Organism
  • 492Homo sapiens
Biosample type
  • 226cell line
  • 180tissue
  • 70primary cell
  • 17in vitro differentiated cells
Organ
  • 254liver
  • 163pancreas
  • 57epithelium
  • 31connective tissue
  • 26adipose tissue
  • 16blood
  • 16bodily fluid
  • 6spleen
  • 4embryo
  • 2brain
Project
  • 493AMP
Genome assembly (visualization)
  • 411hg19
  • 408GRCh38
Lab
  • 492AMP-T2D consortium
  • 1Stephen Parker, UMich
Audit category:
  • 27inconsistent control
  • 7inconsistent ontology term
Audit category:
  • 18missing controlled_by
Audit category:
  • 5inconsistent control read length
target.investigated_as!
  • histone modification
BIOSAMPLE
ASSAY

493 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
cell line
HepG220451
GM1287816
tissue
islet of Langerhans5891
liver431
white adipose tissue12
subcutaneous adipose tissue9
spleen6
primary cell
pancreatic beta cell1024
pancreatic alpha cell1013
pancreatic acinar cell443
pancreatic ductal cell424
co-expressing pancreatic endocrine cell2
in vitro differentiated cells
pancreatic endoderm4
adipocyte21
definitive endodermal cell2
embryonic stem cell2
posterior foregut2
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