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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 345ChIP-seq
  • 136total RNA-seq
  • 27single cell RNA-seq
  • 18ATAC-seq
  • 4DNase-seq
  • 1Hi-C
Assay category
  • 345DNA binding
  • 163Transcription
  • 22DNA accessibility
  • 13D chromatin structure
Target of assay
  • 229transcription factor
  • 82recombinant protein
  • 76control
  • 69histone
  • 69histone modification
  • 38broad histone mark
  • narrow histone mark
  • 26RNA binding protein
  • 9chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 173November, 2017
  • 134August, 2017
  • 57September, 2018
  • 50November, 2018
  • 35December, 2017
  • 25July, 2018
  • 17October, 2018
  • 14February, 2018
  • 12January, 2019
  • 8October, 2017
  • 4December, 2018
  • 1August, 2018
  • 1June, 2018
Available data
  • 531fastq
  • 529bam
  • 451bigWig
  • 261bed narrowPeak
  • 239bigBed narrowPeak
  • 163tsv
  • 16bed broadPeak
  • 13bed bed3+
  • 10bigBed broadPeak
  • 10tagAlign
Organism
  • 526Homo sapiens
Biosample type
  • 227cell line
  • 196tissue
  • 91primary cell
  • 17in vitro differentiated cells
Organ
  • 260liver
  • 192pancreas
  • 67epithelium
  • 31connective tissue
  • 26adipose tissue
  • 16blood
  • 16bodily fluid
  • 6spleen
  • 5brain
  • 4embryo
Project
  • 531AMP
Genome assembly (visualization)
  • 449hg19
  • 446GRCh38
Lab
  • 530AMP-T2D consortium
  • 1Stephen Parker, UMich
Audit category:
  • 27inconsistent control
  • 7inconsistent ontology term
Audit category:
  • 39missing controlled_by
Audit category:
  • 9inconsistent control read length
  • 1inconsistent assembly
target.investigated_as!
  • narrow histone mark
BIOSAMPLE
ASSAY

531 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
cell line
HepG220551
GM1287816
tissue
islet of Langerhans5891
liver481
white adipose tissue12
pancreas10
subcutaneous adipose tissue9
primary cell
pancreatic beta cell1024
pancreatic ductal cell6424
pancreatic acinar cell4443
pancreatic alpha cell1013
pancreatic endocrine cell11
in vitro differentiated cells
pancreatic endoderm4
adipocyte21
definitive endodermal cell2
embryonic stem cell2
posterior foregut2
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