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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 147ChIP-seq
  • 136total RNA-seq
  • 27single cell RNA-seq
  • 18ATAC-seq
  • 4DNase-seq
  • 1Hi-C
Assay category
  • 163Transcription
  • 147DNA binding
  • 22DNA accessibility
  • 13D chromatin structure
Target of assay
  • transcription factor
  • 82recombinant protein
  • 76control
  • 69histone
  • 69histone modification
  • 38broad histone mark
  • 31narrow histone mark
  • 26RNA binding protein
  • 9chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 132August, 2017
  • 72September, 2018
  • 43November, 2017
  • 25July, 2018
  • 14February, 2018
  • 14October, 2018
  • 8December, 2017
  • 8January, 2019
  • 8October, 2017
  • 6November, 2018
  • 1August, 2018
  • 1December, 2018
  • 1June, 2018
Available data
  • 333fastq
  • 331bam
  • 257bigWig
  • 163tsv
  • 79bed narrowPeak
  • 41bigBed narrowPeak
  • 12bed broadPeak
  • 11tagAlign
  • 5bigBed broadPeak
  • 4bed bed3+
Organism
  • 327Homo sapiens
Biosample type
  • 149tissue
  • 115primary cell
  • 53cell line
  • 16in vitro differentiated cells
Organ
  • 213pancreas
  • 78epithelium
  • 69liver
  • 17connective tissue
  • 13adipose tissue
  • 5brain
  • 4blood
  • 4bodily fluid
  • 4embryo
  • 3spleen
Project
  • 333AMP
Genome assembly (visualization)
  • 258hg19
  • 256GRCh38
Lab
  • 332AMP-T2D consortium
  • 1Stephen Parker, UMich
Audit category:
  • 7inconsistent ontology term
Audit category:
  • 45missing controlled_by
Audit category:
  • 6inconsistent control read length
  • 2inconsistent assembly
  • 1inconsistent control run_type
target.investigated_as!
  • transcription factor
BIOSAMPLE
ASSAY

333 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
tissue
islet of Langerhans1891
liver191
pancreas13
subcutaneous adipose tissue7
brain41
primary cell
pancreatic ductal cell13424
pancreatic endocrine cell23
pancreatic acinar cell8443
pancreatic beta cell1024
pancreatic alpha cell1013
cell line
HepG24351
GM128784
in vitro differentiated cells
pancreatic endoderm4
adipocyte11
definitive endodermal cell2
embryonic stem cell2
posterior foregut2
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