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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 136ChIP-seq
  • 11single cell RNA-seq
  • 5GRO-seq
  • 2ATAC-seq
  • 2DNase-seq
  • 1WGBS
Assay category
  • 136DNA binding
  • 11Transcription
  • 4DNA accessibility
  • 1DNA methylation
Target of assay
  • 58transcription factor
  • 57histone
  • 57histone modification
  • 35RNA binding protein
  • 30broad histone mark
  • 27narrow histone mark
  • 20chromatin remodeller
  • 20control
Date released
  • 52December, 2017
  • 23November, 2018
  • 22November, 2017
  • 21October, 2018
  • 12January, 2019
  • 8August, 2017
  • 5January, 2018
  • 4April, 2018
  • 3July, 2018
  • 2December, 2018
  • 1August, 2018
  • 1March, 2019
  • 1October, 2017
  • 1September, 2018
  • 1September, 2020
Available data
  • 156fastq
  • 149bam
  • 131bigWig
  • 111bed narrowPeak
  • 88bigBed narrowPeak
  • 17bed bed3+
  • 8tsv
  • 3bed broadPeak
  • 2bigBed broadPeak
  • 2csv
  • 1bed bedMethyl
  • 1bigBed bedMethyl
  • 1zippedFastqFolder
Organism
  • 157Homo sapiens
Biosample type
  • 52in vitro differentiated cells
  • 48cell line
  • 42tissue
  • 11primary cell
  • 4stem cell
Organ
  • 61liver
  • 32pancreas
  • 27epithelium
  • 14embryo
  • 10blood
  • 10bodily fluid
  • 7spleen
  • 6connective tissue
  • 2brain
  • 1adipose tissue
Project
  • 156AMP
  • 1HPAP
Genome assembly (visualization)
  • 129GRCh38
  • 128hg19
  • 5hg18
Lab
  • 155AMP-T2D consortium
  • 1Klaus Kaestner, Upenn
  • 1Mark McCarthy, Oxford
Audit category:
  • 4inconsistent ontology term
  • 1inconsistent control
Audit category:
  • 13missing controlled_by
Audit category:
  • 23inconsistent control read length
  • 8inconsistent control run_type
files.read_length!
  • 100
BIOSAMPLE
ASSAY

157 results

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Clear Filters
ChIP-seq
single cell RNA-seq
GRO-seq
ATAC-seq
DNase-seq
WGBS
in vitro differentiated cells
hepatocyte15
pancreatic endoderm91
Posterior foregut51
definitive endodermal cell51
primitive gut cell51
cell line
HepG238
GM1287810
tissue
body of pancreas20
spleen7
right lobe of liver6
islet of Langerhans21
liver11
primary cell
pancreatic alpha cell2
pancreatic beta cell2
pancreatic cell2
pancreatic delta cell2
pancreatic polypeptide-secreting cell2
stem cell
hESC31
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