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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 100ChIP-seq
  • 37single cell RNA-seq
  • 6WGBS
  • 5GRO-seq
  • 2ATAC-seq
Assay category
  • 100DNA binding
  • 37Transcription
  • 6DNA methylation
  • 2DNA accessibility
Target of assay
  • 44transcription factor
  • 42histone
  • 42histone modification
  • 31RNA binding protein
  • 25broad histone mark
  • 17narrow histone mark
  • 13control
  • 10chromatin remodeller
Date released
  • 29December, 2017
  • 21April, 2018
  • 21October, 2018
  • 17November, 2018
  • 15November, 2017
  • 12January, 2019
  • 11August, 2017
  • 11July, 2018
  • 5January, 2018
  • 2December, 2018
  • 1August, 2018
  • 1June, 2018
  • 1March, 2019
  • 1October, 2017
  • 1September, 2018
  • 1September, 2020
Available data
  • 149fastq
  • 140bam
  • 130bigWig
  • 81bed narrowPeak
  • 74bigBed narrowPeak
  • 34tsv
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 2csv
  • 1bed bed3+
  • 1bed broadPeak
  • 1zippedFastqFolder
Organism
  • 150Homo sapiens
Biosample type
  • 44tissue
  • 37primary cell
  • 36cell line
  • 31in vitro differentiated cells
  • 2stem cell
Organ
  • 51pancreas
  • 48liver
  • 42epithelium
  • 10blood
  • 10bodily fluid
  • 9connective tissue
  • 7spleen
  • 5embryo
  • 4adipose tissue
  • 1brain
Project
  • 149AMP
  • 1HPAP
Genome assembly (visualization)
  • 125GRCh38
  • 119hg19
  • 5hg18
Lab
  • 148AMP-T2D consortium
  • 1Klaus Kaestner, Upenn
  • 1Mark McCarthy, Oxford
Audit category:
  • 1inconsistent control
  • 1inconsistent ontology term
Audit category:
  • 5missing controlled_by
Audit category:
  • 7inconsistent control read length
files.read_length!
  • 36
BIOSAMPLE
ASSAY

150 results

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Clear Filters
ChIP-seq
single cell RNA-seq
WGBS
GRO-seq
ATAC-seq
tissue
body of pancreas20
spleen7
right lobe of liver6
adipose tissue3
islet of Langerhans21
primary cell
pancreatic alpha cell6
pancreatic beta cell6
pancreatic cell6
pancreatic delta cell5
pancreatic polypeptide-secreting cell5
cell line
HepG226
GM1287810
in vitro differentiated cells
hepatocyte15
adipocyte5
pancreatic endoderm31
Posterior foregut11
definitive endodermal cell11
stem cell
hESC11
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