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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 111ChIP-seq
  • 37single cell RNA-seq
  • 6WGBS
  • 5GRO-seq
  • 2ATAC-seq
  • 2DNase-seq
Assay category
  • 111DNA binding
  • 37Transcription
  • 6DNA methylation
  • 4DNA accessibility
Target of assay
  • 57histone
  • 57histone modification
  • 36transcription factor
  • 30broad histone mark
  • 27narrow histone mark
  • 20chromatin remodeller
  • 18control
  • 12RNA binding protein
Date released
  • 52December, 2017
  • 21April, 2018
  • 21October, 2018
  • 13November, 2018
  • 12August, 2017
  • 12January, 2019
  • 11July, 2018
  • 8November, 2017
  • 5January, 2018
  • 2December, 2018
  • 1August, 2018
  • 1June, 2018
  • 1March, 2019
  • 1October, 2017
  • 1September, 2018
  • 1September, 2020
Available data
  • 162fastq
  • 153bam
  • 138bigWig
  • 89bed narrowPeak
  • 66bigBed narrowPeak
  • 34tsv
  • 17bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3bed broadPeak
  • 2bigBed broadPeak
  • 2csv
  • 1zippedFastqFolder
Organism
  • 163Homo sapiens
Biosample type
  • 52in vitro differentiated cells
  • 47tissue
  • 37primary cell
  • 23cell line
  • 4stem cell
Organ
  • 51pancreas
  • 45epithelium
  • 37liver
  • 14embryo
  • 10blood
  • 10bodily fluid
  • 9connective tissue
  • 7spleen
  • 4adipose tissue
  • 2brain
Project
  • 162AMP
  • 1HPAP
Genome assembly (visualization)
  • 136GRCh38
  • 133hg19
  • 5hg18
Lab
  • 161AMP-T2D consortium
  • 1Klaus Kaestner, Upenn
  • 1Mark McCarthy, Oxford
Audit category:
  • 4inconsistent ontology term
  • 1inconsistent control
Audit category:
  • 13missing controlled_by
Audit category:
  • 23inconsistent control read length
  • 8inconsistent control run_type
files.read_length!
  • 40
BIOSAMPLE
ASSAY

163 results

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Clear Filters
ChIP-seq
single cell RNA-seq
WGBS
GRO-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
hepatocyte15
pancreatic endoderm91
Posterior foregut51
definitive endodermal cell51
primitive gut cell51
tissue
body of pancreas20
spleen7
right lobe of liver6
adipose tissue3
islet of Langerhans21
primary cell
pancreatic alpha cell6
pancreatic beta cell6
pancreatic cell6
pancreatic delta cell5
pancreatic polypeptide-secreting cell5
cell line
HepG213
GM1287810
stem cell
hESC31
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