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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 121ChIP-seq
  • 37single cell RNA-seq
  • 6WGBS
  • 2DNase-seq
Assay category
  • 121DNA binding
  • 37Transcription
  • 6DNA methylation
  • 2DNA accessibility
Target of assay
  • 53transcription factor
  • 50histone
  • 50histone modification
  • 35RNA binding protein
  • 25broad histone mark
  • 25narrow histone mark
  • 20chromatin remodeller
  • 17control
Date released
  • 39December, 2017
  • 24November, 2018
  • 22November, 2017
  • 21April, 2018
  • 21October, 2018
  • 12January, 2019
  • 11July, 2018
  • 10August, 2017
  • 2December, 2018
  • 1August, 2018
  • 1June, 2018
  • 1September, 2018
  • 1September, 2020
Available data
  • 165fastq
  • 161bam
  • 142bigWig
  • 99bed narrowPeak
  • 88bigBed narrowPeak
  • 34tsv
  • 11bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 2bed broadPeak
  • 2bigBed broadPeak
  • 2csv
  • 1zippedFastqFolder
Organism
  • 166Homo sapiens
Biosample type
  • 48cell line
  • 43tissue
  • 37in vitro differentiated cells
  • 37primary cell
  • 1stem cell
Organ
  • 62liver
  • 48pancreas
  • 44epithelium
  • 10blood
  • 10bodily fluid
  • 9connective tissue
  • 8embryo
  • 7spleen
  • 4adipose tissue
  • 1brain
Project
  • 165AMP
  • 1HPAP
Genome assembly (visualization)
  • 145GRCh38
  • 142hg19
Lab
  • 165AMP-T2D consortium
  • 1Klaus Kaestner, Upenn
Audit category:
  • 3inconsistent ontology term
  • 1inconsistent control
Audit category:
  • 13missing controlled_by
Audit category:
  • 13inconsistent control read length
  • 8inconsistent control run_type
files.read_length!
  • 50
BIOSAMPLE
ASSAY

166 results

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Clear Filters
ChIP-seq
single cell RNA-seq
WGBS
DNase-seq
cell line
HepG238
GM1287810
tissue
body of pancreas20
spleen7
right lobe of liver6
adipose tissue3
liver111
in vitro differentiated cells
hepatocyte15
adipocyte5
pancreatic endoderm5
Hepatic endoderm3
Posterior foregut3
primary cell
pancreatic alpha cell6
pancreatic beta cell6
pancreatic cell6
pancreatic delta cell5
pancreatic polypeptide-secreting cell5
stem cell
hESC1
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