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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 132ChIP-seq
  • 28single cell RNA-seq
  • 6WGBS
  • 5GRO-seq
  • 2ATAC-seq
  • 2DNase-seq
Assay category
  • 132DNA binding
  • 28Transcription
  • 6DNA methylation
  • 4DNA accessibility
Target of assay
  • 57histone
  • 57histone modification
  • 54transcription factor
  • 33RNA binding protein
  • 30broad histone mark
  • 27narrow histone mark
  • 20control
  • 16chromatin remodeller
Date released
  • 52December, 2017
  • 24November, 2018
  • 22November, 2017
  • 21October, 2018
  • 17April, 2018
  • 12August, 2017
  • 10January, 2019
  • 8July, 2018
  • 5January, 2018
  • 1June, 2018
  • 1March, 2019
  • 1October, 2017
  • 1September, 2018
Available data
  • 175fastq
  • 166bam
  • 148bigWig
  • 107bed narrowPeak
  • 84bigBed narrowPeak
  • 26tsv
  • 17bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3bed broadPeak
  • 2bigBed broadPeak
  • 2csv
Organism
  • 175Homo sapiens
Biosample type
  • 52in vitro differentiated cells
  • 47tissue
  • 44cell line
  • 28primary cell
  • 4stem cell
Organ
  • 62liver
  • 43pancreas
  • 37epithelium
  • 14embryo
  • 9connective tissue
  • 7spleen
  • 6blood
  • 6bodily fluid
  • 4adipose tissue
  • 2brain
Project
  • 175AMP
Genome assembly (visualization)
  • 146GRCh38
  • 142hg19
  • 5hg18
Lab
  • 174AMP-T2D consortium
  • 1Mark McCarthy, Oxford
Audit category:
  • 4inconsistent ontology term
Audit category:
  • 13missing controlled_by
Audit category:
  • 23inconsistent control read length
  • 8inconsistent control run_type
files.read_length!
  • 75
BIOSAMPLE
ASSAY

175 results

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Clear Filters
ChIP-seq
single cell RNA-seq
WGBS
GRO-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
hepatocyte15
pancreatic endoderm91
Posterior foregut51
definitive endodermal cell51
primitive gut cell51
tissue
body of pancreas20
spleen7
right lobe of liver6
adipose tissue3
islet of Langerhans21
cell line
HepG238
GM128786
primary cell
pancreatic cell6
mesenchymal cell4
pancreatic alpha cell4
pancreatic beta cell4
pancreatic delta cell3
stem cell
hESC31
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