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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 74ChIP-seq
  • 37single cell RNA-seq
  • 6WGBS
  • 5GRO-seq
  • 2ATAC-seq
  • 2DNase-seq
Assay category
  • 74DNA binding
  • 37Transcription
  • 6DNA methylation
  • 4DNA accessibility
Target of assay
  • 46transcription factor
  • 27RNA binding protein
  • 16histone
  • 16histone modification
  • 11control
  • 11narrow histone mark
  • 10chromatin remodeller
  • 5broad histone mark
Date released
  • 31December, 2017
  • 21April, 2018
  • 21November, 2018
  • 19November, 2017
  • 12August, 2017
  • 11July, 2018
  • 5January, 2018
  • 1August, 2018
  • 1June, 2018
  • 1March, 2019
  • 1October, 2017
  • 1September, 2018
  • 1September, 2020
Available data
  • 125fastq
  • 116bam
  • 107bigWig
  • 58bed narrowPeak
  • 35bigBed narrowPeak
  • 34tsv
  • 17bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3bed broadPeak
  • 2bigBed broadPeak
  • 2csv
  • 1zippedFastqFolder
Organism
  • 126Homo sapiens
Biosample type
  • 37in vitro differentiated cells
  • 37primary cell
  • 35cell line
  • 13tissue
  • 4stem cell
Organ
  • 38liver
  • 31pancreas
  • 30epithelium
  • 14embryo
  • 8connective tissue
  • 3adipose tissue
  • 2brain
Project
  • 125AMP
  • 1HPAP
Genome assembly (visualization)
  • 105GRCh38
  • 101hg19
  • 5hg18
Lab
  • 124AMP-T2D consortium
  • 1Klaus Kaestner, Upenn
  • 1Mark McCarthy, Oxford
Audit category:
  • 4inconsistent ontology term
Audit category:
  • 12missing controlled_by
Audit category:
  • 21inconsistent control read length
  • 8inconsistent control run_type
files.read_length!
  • 76
BIOSAMPLE
ASSAY

126 results

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Clear Filters
ChIP-seq
single cell RNA-seq
WGBS
GRO-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
pancreatic endoderm91
Posterior foregut51
definitive endodermal cell51
primitive gut cell51
adipocyte5
primary cell
pancreatic alpha cell6
pancreatic beta cell6
pancreatic cell6
pancreatic delta cell5
pancreatic polypeptide-secreting cell5
cell line
HepG235
tissue
adipose tissue3
islet of Langerhans21
liver111
pancreas2
brain1
stem cell
hESC31
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