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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
5
GRO-seq
2
ATAC-seq
Assay category
15
DNA binding
2
DNA accessibility
Target of assay
7
histone
7
histone modification
5
broad histone mark
5
transcription factor
3
control
2
narrow histone mark
Date released
13
December, 2017
5
January, 2018
2
August, 2017
1
March, 2019
1
October, 2017
Available data
22
fastq
18
bigWig
17
bam
12
bed narrowPeak
6
bed bed3+
1
bed broadPeak
Organism
22
Homo sapiens
Biosample type
15
in vitro differentiated cells
4
tissue
3
stem cell
Organ
6
embryo
3
pancreas
1
brain
1
epithelium
Project
22
AMP
Genome assembly (visualization)
13
GRCh38
12
hg19
5
hg18
Lab
21
AMP-T2D consortium
1
Mark McCarthy, Oxford
Audit category:
1
inconsistent ontology term
Audit category:
10
inconsistent control read length
BIOSAMPLE
ASSAY
22 results
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ChIP-seq
GRO-seq
ATAC-seq
in vitro differentiated cells
pancreatic endoderm
4
1
Posterior foregut
2
1
definitive endodermal cell
2
1
primitive gut cell
2
1
Hepatic endoderm
1
tissue
islet of Langerhans
2
1
cerebellum (Hemisphere)
1
stem cell
hESC
2
1
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