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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
ChIP-seq
2
DNase-seq
2
single cell RNA-seq
1
ATAC-seq
Assay category
8
DNA binding
3
DNA accessibility
2
Transcription
Target of assay
8
chromatin remodeller
8
transcription factor
3
RNA binding protein
Date released
7
November, 2018
4
November, 2017
1
March, 2019
1
September, 2018
Available data
13
fastq
11
bam
10
bed narrowPeak
10
bigBed narrowPeak
10
bigWig
3
bed broadPeak
2
bed bed3+
2
bigBed broadPeak
2
csv
Organism
13
Homo sapiens
Biosample type
8
cell line
3
tissue
2
primary cell
Organ
9
liver
1
brain
1
pancreas
Project
13
AMP
Genome assembly (visualization)
10
hg19
8
GRCh38
Lab
12
AMP-T2D consortium
1
Mark McCarthy, Oxford
Audit category:
6
missing controlled_by
Audit category:
8
inconsistent control run_type
7
inconsistent control read length
files.run_type!
single-ended
BIOSAMPLE
ASSAY
13 results
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ChIP-seq
DNase-seq
single cell RNA-seq
ATAC-seq
cell line
HepG2
8
tissue
brain
1
islet of Langerhans
1
liver
1
primary cell
pancreatic cell
2
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