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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 9ChIP-seq
  • 2DNase-seq
  • 2single cell RNA-seq
  • 1ATAC-seq
Assay category
  • 9DNA binding
  • 3DNA accessibility
  • 2Transcription
Target of assay
  • 8chromatin remodeller
  • 8transcription factor
  • 3RNA binding protein
  • 1histone
  • 1histone modification
  • 1narrow histone mark
Date released
  • 7November, 2018
  • 5November, 2017
  • 1March, 2019
  • 1September, 2018
Available data
  • 14fastq
  • 12bam
  • 11bed narrowPeak
  • 11bigBed narrowPeak
  • 11bigWig
  • 3bed broadPeak
  • 2bed bed3+
  • 2bigBed broadPeak
  • 2csv
Organism
  • 14Homo sapiens
Biosample type
  • 9cell line
  • 3tissue
  • 2primary cell
Organ
  • 10liver
  • 1brain
  • 1pancreas
Project
  • 14AMP
Genome assembly (visualization)
  • 11hg19
  • 9GRCh38
Lab
  • 13AMP-T2D consortium
  • 1Mark McCarthy, Oxford
Audit category:
  • 7missing controlled_by
Audit category:
  • 8inconsistent control run_type
  • 7inconsistent control read length
BIOSAMPLE
ASSAY

14 results

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Clear Filters
ChIP-seq
DNase-seq
single cell RNA-seq
ATAC-seq
cell line
HepG29
tissue
brain1
islet of Langerhans1
liver1
primary cell
pancreatic cell2
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