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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 128ChIP-seq
  • 35single cell RNA-seq
  • 6WGBS
  • 5GRO-seq
  • 1ATAC-seq
Assay category
  • 128DNA binding
  • 35Transcription
  • 6DNA methylation
  • 1DNA accessibility
Target of assay
  • 57histone
  • 57histone modification
  • 50transcription factor
  • 32RNA binding protein
  • 30broad histone mark
  • 27narrow histone mark
  • 20control
  • 12chromatin remodeller
Date released
  • 52December, 2017
  • 21April, 2018
  • 21October, 2018
  • 18November, 2017
  • 17November, 2018
  • 12August, 2017
  • 12January, 2019
  • 11July, 2018
  • 5January, 2018
  • 2December, 2018
  • 1August, 2018
  • 1June, 2018
  • 1October, 2017
  • 1September, 2020
Available data
  • 174fastq
  • 167bam
  • 150bigWig
  • 101bed narrowPeak
  • 78bigBed narrowPeak
  • 34tsv
  • 15bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 1zippedFastqFolder
Organism
  • 175Homo sapiens
Biosample type
  • 52in vitro differentiated cells
  • 44tissue
  • 40cell line
  • 35primary cell
  • 4stem cell
Organ
  • 53liver
  • 50pancreas
  • 45epithelium
  • 14embryo
  • 10blood
  • 10bodily fluid
  • 9connective tissue
  • 7spleen
  • 4adipose tissue
  • 1brain
Project
  • 174AMP
  • 1HPAP
Genome assembly (visualization)
  • 150GRCh38
  • 144hg19
  • 5hg18
Lab
  • 174AMP-T2D consortium
  • 1Klaus Kaestner, Upenn
Audit category:
  • 4inconsistent ontology term
  • 1inconsistent control
Audit category:
  • 7missing controlled_by
Audit category:
  • 16inconsistent control read length
BIOSAMPLE
ASSAY

175 results

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Clear Filters
ChIP-seq
single cell RNA-seq
WGBS
GRO-seq
ATAC-seq
in vitro differentiated cells
hepatocyte15
pancreatic endoderm91
Posterior foregut51
definitive endodermal cell51
primitive gut cell51
tissue
body of pancreas20
spleen7
right lobe of liver6
adipose tissue3
islet of Langerhans2
cell line
HepG230
GM1287810
primary cell
pancreatic alpha cell6
pancreatic beta cell6
pancreatic delta cell5
pancreatic polypeptide-secreting cell5
mesenchymal cell4
stem cell
hESC31
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