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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 84ChIP-seq
  • 37single cell RNA-seq
  • 6WGBS
  • 5GRO-seq
  • 2ATAC-seq
  • 2DNase-seq
Assay category
  • 84DNA binding
  • 37Transcription
  • 6DNA methylation
  • 4DNA accessibility
Target of assay
  • 47transcription factor
  • 33RNA binding protein
  • 26histone
  • 26histone modification
  • 19chromatin remodeller
  • 15broad histone mark
  • 11narrow histone mark
  • 10control
Date released
  • December, 2017
  • 24November, 2018
  • 22November, 2017
  • 21April, 2018
  • 21October, 2018
  • 12August, 2017
  • 12January, 2019
  • 11July, 2018
  • 5January, 2018
  • 2December, 2018
  • 1August, 2018
  • 1June, 2018
  • 1March, 2019
  • 1October, 2017
  • 1September, 2018
  • 1September, 2020
Available data
  • 135fastq
  • 126bam
  • 119bigWig
  • 70bed narrowPeak
  • 69bigBed narrowPeak
  • 34tsv
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3bed broadPeak
  • 2bed bed3+
  • 2bigBed broadPeak
  • 2csv
  • 1zippedFastqFolder
Organism
  • 136Homo sapiens
Biosample type
  • 48cell line
  • 41tissue
  • 37primary cell
  • 9in vitro differentiated cells
  • 1stem cell
Organ
  • 51pancreas
  • 41liver
  • 26epithelium
  • 10blood
  • 10bodily fluid
  • 9connective tissue
  • 7spleen
  • 4adipose tissue
  • 2brain
  • 1embryo
Project
  • 135AMP
  • 1HPAP
Genome assembly (visualization)
  • 112GRCh38
  • 108hg19
  • 5hg18
Lab
  • 134AMP-T2D consortium
  • 1Klaus Kaestner, Upenn
  • 1Mark McCarthy, Oxford
Audit category:
  • 1inconsistent control
Audit category:
  • 12missing controlled_by
Audit category:
  • 12inconsistent control read length
  • 8inconsistent control run_type
month_released!
  • December, 2017
BIOSAMPLE
ASSAY

136 results

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Clear Filters
ChIP-seq
single cell RNA-seq
WGBS
GRO-seq
ATAC-seq
DNase-seq
cell line
HepG238
GM1287810
tissue
body of pancreas20
spleen7
adipose tissue3
islet of Langerhans21
liver111
primary cell
pancreatic alpha cell6
pancreatic beta cell6
pancreatic cell6
pancreatic delta cell5
pancreatic polypeptide-secreting cell5
in vitro differentiated cells
adipocyte5
Posterior foregut1
definitive endodermal cell1
pancreatic endoderm1
primitive gut cell1
stem cell
hESC1
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