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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 117ChIP-seq
  • 36single cell RNA-seq
  • 5GRO-seq
  • 4WGBS
  • 2ATAC-seq
Assay category
  • 117DNA binding
  • 36Transcription
  • 4DNA methylation
  • 2DNA accessibility
Target of assay
  • 57histone
  • 57histone modification
  • 40transcription factor
  • 30broad histone mark
  • 27narrow histone mark
  • 22RNA binding protein
  • 19control
  • 13chromatin remodeller
Date released
  • 52December, 2017
  • November, 2018
  • 22November, 2017
  • 21April, 2018
  • 21October, 2018
  • 12August, 2017
  • 12January, 2019
  • 11July, 2018
  • 5January, 2018
  • 2December, 2018
  • 1August, 2018
  • 1June, 2018
  • 1March, 2019
  • 1October, 2017
  • 1September, 2018
  • 1September, 2020
Available data
  • 163fastq
  • 155bam
  • 138bigWig
  • 91bed narrowPeak
  • 68bigBed narrowPeak
  • 34tsv
  • 15bed bed3+
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 1bed broadPeak
  • 1csv
  • 1zippedFastqFolder
Organism
  • 164Homo sapiens
Biosample type
  • 52in vitro differentiated cells
  • 43tissue
  • 36primary cell
  • 29cell line
  • 4stem cell
Organ
  • 49pancreas
  • 45epithelium
  • 45liver
  • 14embryo
  • 9connective tissue
  • 7blood
  • 7bodily fluid
  • 7spleen
  • 4adipose tissue
  • 1brain
Project
  • 163AMP
  • 1HPAP
Genome assembly (visualization)
  • 136GRCh38
  • 134hg19
  • 5hg18
Lab
  • 162AMP-T2D consortium
  • 1Klaus Kaestner, Upenn
  • 1Mark McCarthy, Oxford
Audit category:
  • 4inconsistent ontology term
  • 1inconsistent control
Audit category:
  • 11missing controlled_by
Audit category:
  • 18inconsistent control read length
  • 4inconsistent control run_type
month_released!
  • November, 2018
BIOSAMPLE
ASSAY

164 results

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Clear Filters
ChIP-seq
single cell RNA-seq
GRO-seq
WGBS
ATAC-seq
in vitro differentiated cells
hepatocyte15
pancreatic endoderm91
Posterior foregut51
definitive endodermal cell51
primitive gut cell51
tissue
body of pancreas20
spleen7
right lobe of liver6
adipose tissue3
islet of Langerhans21
primary cell
pancreatic alpha cell6
pancreatic beta cell6
pancreatic cell5
pancreatic delta cell5
pancreatic polypeptide-secreting cell5
cell line
HepG222
GM128787
stem cell
hESC31
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