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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 19ChIP-seq
  • 2DNase-seq
  • 2WGBS
  • 1single cell RNA-seq
Assay category
  • 19DNA binding
  • 2DNA accessibility
  • 2DNA methylation
  • 1Transcription
Target of assay
  • 18transcription factor
  • 13RNA binding protein
  • 7chromatin remodeller
  • 1control
Date released
  • 52December, 2017
  • 24November, 2018
  • 22November, 2017
  • 21April, 2018
  • 21October, 2018
  • 12August, 2017
  • 12January, 2019
  • 11July, 2018
  • 5January, 2018
  • 2December, 2018
  • 1August, 2018
  • 1June, 2018
  • 1March, 2019
  • 1October, 2017
  • 1September, 2018
  • 1September, 2020
Available data
  • 24fastq
  • 23bam
  • 22bigWig
  • 20bed narrowPeak
  • 20bigBed narrowPeak
  • 2bed bed3+
  • 2bed bedMethyl
  • 2bed broadPeak
  • 2bigBed bedMethyl
  • 2bigBed broadPeak
  • 1csv
Organism
  • 24Homo sapiens
Biosample type
  • 19cell line
  • 4tissue
  • 1primary cell
Organ
  • 17liver
  • 3blood
  • 3bodily fluid
  • 2pancreas
  • 1brain
Project
  • 24AMP
Genome assembly (visualization)
  • 22GRCh38
  • 20hg19
Lab
  • 24AMP-T2D consortium
Audit category:
  • 2missing controlled_by
Audit category:
  • 5inconsistent control read length
  • 4inconsistent control run_type
BIOSAMPLE
ASSAY

24 results

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Clear Filters
ChIP-seq
DNase-seq
WGBS
single cell RNA-seq
cell line
HepG216
GM128783
tissue
pancreas2
brain1
liver1
primary cell
pancreatic cell1
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