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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 126ChIP-seq
  • 37single cell RNA-seq
  • 6WGBS
  • 5GRO-seq
  • 2ATAC-seq
  • 2DNase-seq
Assay category
  • 126DNA binding
  • 37Transcription
  • 6DNA methylation
  • 4DNA accessibility
Target of assay
  • 56histone
  • 56histone modification
  • 50transcription factor
  • 30RNA binding protein
  • 30broad histone mark
  • 26narrow histone mark
  • 19control
  • 12chromatin remodeller
Date released
  • 52December, 2017
  • 22November, 2017
  • 21April, 2018
  • 21November, 2018
  • 21October, 2018
  • 12August, 2017
  • 11July, 2018
  • 7January, 2019
  • 5January, 2018
  • 1August, 2018
  • 1June, 2018
  • 1March, 2019
  • 1October, 2017
  • 1September, 2018
  • 1September, 2020
Available data
  • 177fastq
  • 168bam
  • 151bigWig
  • 102bed narrowPeak
  • 79bigBed narrowPeak
  • 34tsv
  • 17bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3bed broadPeak
  • 2bigBed broadPeak
  • 2csv
  • 1zippedFastqFolder
Organism
  • 178Homo sapiens
Biosample type
  • 52in vitro differentiated cells
  • 47tissue
  • 38cell line
  • 37primary cell
  • 4stem cell
Organ
  • 62liver
  • 51pancreas
  • 45epithelium
  • 14embryo
  • 10blood
  • bodily fluid
  • 9connective tissue
  • 7spleen
  • 4adipose tissue
  • 2brain
Project
  • 177AMP
  • 1HPAP
Genome assembly (visualization)
  • 149GRCh38
  • 145hg19
  • 5hg18
Lab
  • 176AMP-T2D consortium
  • 1Klaus Kaestner, Upenn
  • 1Mark McCarthy, Oxford
Audit category:
  • 4inconsistent ontology term
Audit category:
  • 13missing controlled_by
Audit category:
  • 23inconsistent control read length
  • 8inconsistent control run_type
organ_slims!
  • bodily fluid
BIOSAMPLE
ASSAY

178 results

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Clear Filters
ChIP-seq
single cell RNA-seq
WGBS
GRO-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
hepatocyte15
pancreatic endoderm91
Posterior foregut51
definitive endodermal cell51
primitive gut cell51
tissue
body of pancreas20
spleen7
right lobe of liver6
adipose tissue3
islet of Langerhans21
cell line
HepG238
primary cell
pancreatic alpha cell6
pancreatic beta cell6
pancreatic cell6
pancreatic delta cell5
pancreatic polypeptide-secreting cell5
stem cell
hESC31
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