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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 130ChIP-seq
  • 37single cell RNA-seq
  • 5GRO-seq
  • 3WGBS
  • 2ATAC-seq
  • 2DNase-seq
Assay category
  • 130DNA binding
  • 37Transcription
  • 4DNA accessibility
  • 3DNA methylation
Target of assay
  • 57histone
  • 57histone modification
  • 53transcription factor
  • 35RNA binding protein
  • 30broad histone mark
  • 27narrow histone mark
  • 20chromatin remodeller
  • 19control
Date released
  • 52December, 2017
  • 24November, 2018
  • 22November, 2017
  • 21April, 2018
  • 20October, 2018
  • 12January, 2019
  • 11July, 2018
  • 5January, 2018
  • 4August, 2017
  • 2December, 2018
  • 1August, 2018
  • 1June, 2018
  • 1March, 2019
  • 1October, 2017
  • 1September, 2018
  • 1September, 2020
Available data
  • 178fastq
  • 170bam
  • 153bigWig
  • 111bed narrowPeak
  • 88bigBed narrowPeak
  • 34tsv
  • 17bed bed3+
  • 3bed broadPeak
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 2bigBed broadPeak
  • 2csv
  • 1zippedFastqFolder
Organism
  • 179Homo sapiens
Biosample type
  • 48cell line
  • 47in vitro differentiated cells
  • 43tissue
  • 37primary cell
  • 4stem cell
Organ
  • 62liver
  • 51pancreas
  • 45epithelium
  • 14embryo
  • 10blood
  • 10bodily fluid
  • connective tissue
  • 7spleen
  • 4adipose tissue
  • 2brain
Project
  • 178AMP
  • 1HPAP
Genome assembly (visualization)
  • 151GRCh38
  • 149hg19
  • 5hg18
Lab
  • 177AMP-T2D consortium
  • 1Klaus Kaestner, Upenn
  • 1Mark McCarthy, Oxford
Audit category:
  • 4inconsistent ontology term
  • 1inconsistent control
Audit category:
  • 8missing controlled_by
Audit category:
  • 23inconsistent control read length
  • 8inconsistent control run_type
organ_slims!
  • connective tissue
BIOSAMPLE
ASSAY

179 results

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Clear Filters
ChIP-seq
single cell RNA-seq
GRO-seq
WGBS
ATAC-seq
DNase-seq
cell line
HepG238
GM1287810
in vitro differentiated cells
hepatocyte15
pancreatic endoderm91
Posterior foregut51
definitive endodermal cell51
primitive gut cell51
tissue
body of pancreas20
spleen7
right lobe of liver6
islet of Langerhans21
liver111
primary cell
pancreatic alpha cell6
pancreatic beta cell6
pancreatic cell6
pancreatic delta cell5
pancreatic polypeptide-secreting cell5
stem cell
hESC31
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