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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 123ChIP-seq
  • 37single cell RNA-seq
  • 6WGBS
  • 4GRO-seq
  • 2ATAC-seq
  • 2DNase-seq
Assay category
  • 123DNA binding
  • 37Transcription
  • 6DNA methylation
  • 4DNA accessibility
Target of assay
  • 55transcription factor
  • 51histone
  • 51histone modification
  • 35RNA binding protein
  • 29broad histone mark
  • 22narrow histone mark
  • 20chromatin remodeller
  • 16control
Date released
  • 39December, 2017
  • 24November, 2018
  • 22November, 2017
  • 21April, 2018
  • 21October, 2018
  • 12August, 2017
  • 12January, 2019
  • 11July, 2018
  • 4January, 2018
  • 2December, 2018
  • 1August, 2018
  • 1June, 2018
  • 1March, 2019
  • 1October, 2017
  • 1September, 2018
  • 1September, 2020
Available data
  • 173fastq
  • 165bam
  • 151bigWig
  • 103bed narrowPeak
  • 88bigBed narrowPeak
  • 34tsv
  • 14bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3bed broadPeak
  • 2bigBed broadPeak
  • 2csv
  • 1zippedFastqFolder
Organism
  • 174Homo sapiens
Biosample type
  • 48cell line
  • 47tissue
  • 38in vitro differentiated cells
  • 37primary cell
  • 4stem cell
Organ
  • 62liver
  • 51pancreas
  • 45epithelium
  • embryo
  • 10blood
  • 10bodily fluid
  • 9connective tissue
  • 7spleen
  • 4adipose tissue
  • 2brain
Project
  • 173AMP
  • 1HPAP
Genome assembly (visualization)
  • 149GRCh38
  • 145hg19
  • 4hg18
Lab
  • 172AMP-T2D consortium
  • 1Klaus Kaestner, Upenn
  • 1Mark McCarthy, Oxford
Audit category:
  • 1inconsistent control
Audit category:
  • 12missing controlled_by
Audit category:
  • 20inconsistent control read length
  • 8inconsistent control run_type
organ_slims!
  • embryo
BIOSAMPLE
ASSAY

174 results

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Clear Filters
ChIP-seq
single cell RNA-seq
WGBS
GRO-seq
ATAC-seq
DNase-seq
cell line
HepG238
GM1287810
tissue
body of pancreas20
spleen7
right lobe of liver6
adipose tissue3
islet of Langerhans21
in vitro differentiated cells
hepatocyte15
Posterior foregut51
definitive endodermal cell51
primitive gut cell51
adipocyte5
primary cell
pancreatic alpha cell6
pancreatic beta cell6
pancreatic cell6
pancreatic delta cell5
pancreatic polypeptide-secreting cell5
stem cell
hESC31
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