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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 117ChIP-seq
  • 11single cell RNA-seq
  • 6WGBS
  • 5GRO-seq
  • 2ATAC-seq
  • 2DNase-seq
Assay category
  • 117DNA binding
  • 11Transcription
  • 6DNA methylation
  • 4DNA accessibility
Target of assay
  • 56transcription factor
  • 43histone
  • 43histone modification
  • 33RNA binding protein
  • 23broad histone mark
  • 20narrow histone mark
  • 19chromatin remodeller
  • 17control
Date released
  • 33December, 2017
  • 24November, 2018
  • 22November, 2017
  • 21October, 2018
  • 12August, 2017
  • 12January, 2019
  • 6April, 2018
  • 5January, 2018
  • 2December, 2018
  • 2July, 2018
  • 1March, 2019
  • 1October, 2017
  • 1September, 2018
  • 1September, 2020
Available data
  • 142fastq
  • 133bam
  • 118bigWig
  • 95bed narrowPeak
  • 74bigBed narrowPeak
  • 17bed bed3+
  • 8tsv
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3bed broadPeak
  • 2bigBed broadPeak
  • 2csv
  • 1zippedFastqFolder
Organism
  • 143Homo sapiens
Biosample type
  • 48cell line
  • 47tissue
  • 33in vitro differentiated cells
  • 11primary cell
  • 4stem cell
Organ
  • 62liver
  • 51pancreas
  • epithelium
  • 14embryo
  • 10blood
  • 10bodily fluid
  • 9connective tissue
  • 7spleen
  • 4adipose tissue
  • 2brain
Project
  • 142AMP
  • 1HPAP
Genome assembly (visualization)
  • 116GRCh38
  • 112hg19
  • 5hg18
Lab
  • 141AMP-T2D consortium
  • 1Klaus Kaestner, Upenn
  • 1Mark McCarthy, Oxford
Audit category:
  • 1inconsistent control
Audit category:
  • 13missing controlled_by
Audit category:
  • 22inconsistent control read length
  • 8inconsistent control run_type
organ_slims!
  • epithelium
BIOSAMPLE
ASSAY

143 results

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Clear Filters
ChIP-seq
single cell RNA-seq
WGBS
GRO-seq
ATAC-seq
DNase-seq
cell line
HepG238
GM1287810
tissue
body of pancreas20
spleen7
right lobe of liver6
adipose tissue3
islet of Langerhans21
in vitro differentiated cells
pancreatic endoderm91
Posterior foregut51
definitive endodermal cell51
primitive gut cell51
adipocyte5
primary cell
pancreatic cell6
mesenchymal cell4
Langerhans cell1
stem cell
hESC31
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