Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 76ChIP-seq
  • 37single cell RNA-seq
  • 5GRO-seq
  • 5WGBS
  • 2ATAC-seq
  • 1DNase-seq
Assay category
  • 76DNA binding
  • 37Transcription
  • 5DNA methylation
  • 3DNA accessibility
Target of assay
  • 38histone
  • 38histone modification
  • 23transcription factor
  • 20broad histone mark
  • 18narrow histone mark
  • 15control
  • 8chromatin remodeller
  • 6RNA binding protein
Date released
  • 31December, 2017
  • 21April, 2018
  • 21October, 2018
  • 12January, 2019
  • 11July, 2018
  • 10August, 2017
  • 7November, 2018
  • 5January, 2018
  • 2December, 2018
  • 1August, 2018
  • 1June, 2018
  • 1March, 2019
  • 1October, 2017
  • 1September, 2018
  • 1September, 2020
Available data
  • 125fastq
  • 117bam
  • 105bigWig
  • 56bed narrowPeak
  • 34tsv
  • 33bigBed narrowPeak
  • 16bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 2bed broadPeak
  • 2csv
  • 1bigBed broadPeak
  • 1zippedFastqFolder
Organism
  • 126Homo sapiens
Biosample type
  • 38tissue
  • 37in vitro differentiated cells
  • 37primary cell
  • 10cell line
  • 4stem cell
Organ
  • liver
  • 51pancreas
  • 45epithelium
  • 14embryo
  • 10blood
  • 10bodily fluid
  • 9connective tissue
  • 7spleen
  • 4adipose tissue
  • 2brain
Project
  • 125AMP
  • 1HPAP
Genome assembly (visualization)
  • 105GRCh38
  • 100hg19
  • 5hg18
Lab
  • 124AMP-T2D consortium
  • 1Klaus Kaestner, Upenn
  • 1Mark McCarthy, Oxford
Audit category:
  • 4inconsistent ontology term
  • 1inconsistent control
Audit category:
  • 6missing controlled_by
Audit category:
  • 12inconsistent control read length
organ_slims!
  • liver
BIOSAMPLE
ASSAY

126 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
single cell RNA-seq
GRO-seq
WGBS
ATAC-seq
DNase-seq
tissue
body of pancreas20
spleen7
adipose tissue3
islet of Langerhans21
pancreas2
in vitro differentiated cells
pancreatic endoderm91
Posterior foregut51
definitive endodermal cell51
primitive gut cell51
adipocyte5
primary cell
pancreatic alpha cell6
pancreatic beta cell6
pancreatic cell6
pancreatic delta cell5
pancreatic polypeptide-secreting cell5
cell line
GM1287810
stem cell
hESC31
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego