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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 114ChIP-seq
  • 11single cell RNA-seq
  • 5GRO-seq
  • 4WGBS
  • 2DNase-seq
  • 1ATAC-seq
Assay category
  • 114DNA binding
  • 11Transcription
  • 4DNA methylation
  • 3DNA accessibility
Target of assay
  • 57transcription factor
  • 40histone
  • 40histone modification
  • 34RNA binding protein
  • 21narrow histone mark
  • 20chromatin remodeller
  • 19broad histone mark
  • 16control
Date released
  • 52December, 2017
  • 22November, 2017
  • 22November, 2018
  • 12January, 2019
  • 10August, 2017
  • 6April, 2018
  • 5January, 2018
  • 2December, 2018
  • 2July, 2018
  • 1October, 2017
  • 1October, 2018
  • 1September, 2018
  • 1September, 2020
Available data
  • 136fastq
  • 127bam
  • 114bigWig
  • 93bed narrowPeak
  • 71bigBed narrowPeak
  • 17bed bed3+
  • 8tsv
  • 2bed bedMethyl
  • 2bed broadPeak
  • 2bigBed bedMethyl
  • 2bigBed broadPeak
  • 2csv
  • 1zippedFastqFolder
Organism
  • 137Homo sapiens
Biosample type
  • 52in vitro differentiated cells
  • 48cell line
  • 22tissue
  • 11primary cell
  • 4stem cell
Organ
  • 62liver
  • pancreas
  • 45epithelium
  • 14embryo
  • 10blood
  • 10bodily fluid
  • 9connective tissue
  • 7spleen
  • 4adipose tissue
  • 2brain
Project
  • 136AMP
  • 1HPAP
Genome assembly (visualization)
  • 112GRCh38
  • 110hg19
  • 5hg18
Lab
  • 136AMP-T2D consortium
  • 1Klaus Kaestner, Upenn
Audit category:
  • 4inconsistent ontology term
  • 1inconsistent control
Audit category:
  • 13missing controlled_by
Audit category:
  • 22inconsistent control read length
  • 8inconsistent control run_type
organ_slims!
  • pancreas
BIOSAMPLE
ASSAY

137 results

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Clear Filters
ChIP-seq
single cell RNA-seq
GRO-seq
WGBS
DNase-seq
ATAC-seq
in vitro differentiated cells
hepatocyte15
pancreatic endoderm91
Posterior foregut51
definitive endodermal cell51
primitive gut cell51
cell line
HepG238
GM1287810
tissue
spleen7
right lobe of liver6
adipose tissue3
liver111
brain1
primary cell
pancreatic cell6
mesenchymal cell4
Langerhans cell1
stem cell
hESC31
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