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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 60ChIP-seq
  • 1DNase-seq
  • 1WGBS
Assay category
  • 60DNA binding
  • 1DNA accessibility
  • 1DNA methylation
Target of assay
  • 35transcription factor
  • 29RNA binding protein
  • 19histone
  • 19histone modification
  • 12chromatin remodeller
  • 10broad histone mark
  • 9narrow histone mark
  • 5control
Date released
  • 22November, 2017
  • 21December, 2017
  • 17November, 2018
  • 2August, 2017
Available data
  • 62fastq
  • 61bam
  • 55bed narrowPeak
  • 55bigBed narrowPeak
  • 55bigWig
  • 1bed bed3+
  • 1bed broadPeak
  • 1bigBed broadPeak
Organism
  • 62Homo sapiens
Biosample type
  • 38cell line
  • 15in vitro differentiated cells
  • 9tissue
Organ
  • 62liver
  • 51pancreas
  • 45epithelium
  • 14embryo
  • 10blood
  • 10bodily fluid
  • 9connective tissue
  • 7spleen
  • 4adipose tissue
  • 2brain
Project
  • 62AMP
Genome assembly (visualization)
  • 54hg19
  • 53GRCh38
Lab
  • 62AMP-T2D consortium
Audit category:
  • 7missing controlled_by
Audit category:
  • 11inconsistent control read length
  • 8inconsistent control run_type
BIOSAMPLE
ASSAY

62 results

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Clear Filters
ChIP-seq
DNase-seq
WGBS
cell line
HepG238
in vitro differentiated cells
hepatocyte15
tissue
right lobe of liver6
liver111
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