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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 51ChIP-seq
  • 37single cell RNA-seq
  • 6WGBS
  • 5GRO-seq
  • 2ATAC-seq
  • 2DNase-seq
Assay category
  • 51DNA binding
  • 37Transcription
  • 6DNA methylation
  • 4DNA accessibility
Target of assay
  • 24histone
  • 24histone modification
  • 17transcription factor
  • 14broad histone mark
  • 10control
  • 10narrow histone mark
  • 2RNA binding protein
  • 2chromatin remodeller
Date released
  • 21April, 2018
  • 20December, 2017
  • 14October, 2018
  • 12August, 2017
  • 11July, 2018
  • 7January, 2019
  • 7November, 2018
  • 5January, 2018
  • 1August, 2018
  • 1June, 2018
  • 1March, 2019
  • 1October, 2017
  • 1September, 2018
  • 1September, 2020
Available data
  • 102fastq
  • 93bam
  • 86bigWig
  • 37bed narrowPeak
  • 34tsv
  • 24bigBed narrowPeak
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3bed broadPeak
  • 2bed bed3+
  • 2bigBed broadPeak
  • 2csv
  • 1zippedFastqFolder
Organism
  • 103Homo sapiens
Biosample type
  • 38tissue
  • 37primary cell
  • 25in vitro differentiated cells
  • 2cell line
  • 1stem cell
Organ
  • 44pancreas
  • 30epithelium
  • 11embryo
  • 9connective tissue
  • 7liver
  • 7spleen
  • 4adipose tissue
  • 2blood
  • 2bodily fluid
  • 2brain
Project
  • 102AMP
  • 1HPAP
Genome assembly (visualization)
  • 81GRCh38
  • 76hg19
  • 5hg18
Lab
  • 101AMP-T2D consortium
  • 1Klaus Kaestner, Upenn
  • 1Mark McCarthy, Oxford
Audit category:
  • 4inconsistent ontology term
Audit category:
  • 6missing controlled_by
Audit category:
  • 6inconsistent control read length
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

103 results

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Clear Filters
ChIP-seq
single cell RNA-seq
WGBS
GRO-seq
ATAC-seq
DNase-seq
tissue
body of pancreas13
spleen7
right lobe of liver4
adipose tissue3
islet of Langerhans21
primary cell
pancreatic alpha cell6
pancreatic beta cell6
pancreatic cell6
pancreatic delta cell5
pancreatic polypeptide-secreting cell5
in vitro differentiated cells
pancreatic endoderm61
adipocyte5
Hepatic endoderm4
Posterior foregut21
definitive endodermal cell21
cell line
GM128782
stem cell
hESC1
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