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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 85ChIP-seq
  • 25single cell RNA-seq
  • 1ATAC-seq
  • 1DNase-seq
Assay category
  • 85DNA binding
  • 25Transcription
  • 2DNA accessibility
Target of assay
  • 41transcription factor
  • 33RNA binding protein
  • 33histone
  • 33histone modification
  • 18chromatin remodeller
  • 17narrow histone mark
  • 16broad histone mark
  • 10control
Date released
  • 32December, 2017
  • 22November, 2017
  • 18November, 2018
  • 14April, 2018
  • 9July, 2018
  • 7October, 2018
  • 5January, 2019
  • 2December, 2018
  • 1August, 2018
  • 1March, 2019
  • 1September, 2018
Available data
  • 112fastq
  • 111bam
  • 99bigWig
  • 75bed narrowPeak
  • 65bigBed narrowPeak
  • 24tsv
  • 16bed bed3+
  • 2bed broadPeak
  • 1bigBed broadPeak
  • 1csv
Organism
  • 112Homo sapiens
Biosample type
  • 46cell line
  • 27in vitro differentiated cells
  • 25primary cell
  • 11tissue
  • 3stem cell
Organ
  • 56liver
  • 35epithelium
  • 28pancreas
  • 8blood
  • 8bodily fluid
  • 3embryo
Project
  • 112AMP
Genome assembly (visualization)
  • 103hg19
  • 102GRCh38
Lab
  • 111AMP-T2D consortium
  • 1Mark McCarthy, Oxford
Audit category:
  • 1inconsistent control
Audit category:
  • 7missing controlled_by
Audit category:
  • 17inconsistent control read length
  • 8inconsistent control run_type
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

112 results

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Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
cell line
HepG238
GM128788
in vitro differentiated cells
hepatocyte15
Posterior foregut3
definitive endodermal cell3
pancreatic endoderm3
primitive gut cell3
primary cell
pancreatic alpha cell5
pancreatic beta cell5
pancreatic cell4
pancreatic delta cell4
pancreatic polypeptide-secreting cell4
tissue
body of pancreas7
right lobe of liver2
islet of Langerhans1
liver1
stem cell
hESC3
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