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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 51ChIP-seq
  • 12single cell RNA-seq
  • 6WGBS
  • 5GRO-seq
  • 1ATAC-seq
  • 1DNase-seq
Assay category
  • 51DNA binding
  • 12Transcription
  • 6DNA methylation
  • 2DNA accessibility
Target of assay
  • 24histone
  • 24histone modification
  • 17transcription factor
  • 14broad histone mark
  • 10control
  • 10narrow histone mark
  • 2RNA binding protein
  • 2chromatin remodeller
Date released
  • 20December, 2017
  • 14October, 2018
  • 12August, 2017
  • 7April, 2018
  • 7January, 2019
  • 6November, 2018
  • 5January, 2018
  • 2July, 2018
  • 1June, 2018
  • 1October, 2017
  • 1September, 2020
Available data
  • 75fastq
  • 67bam
  • 61bigWig
  • 36bed narrowPeak
  • 23bigBed narrowPeak
  • 10tsv
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 1bed bed3+
  • 1bed broadPeak
  • 1bigBed broadPeak
  • 1csv
  • 1zippedFastqFolder
Organism
  • 76Homo sapiens
Biosample type
  • 36tissue
  • 25in vitro differentiated cells
  • 12primary cell
  • 2cell line
  • 1stem cell
Organ
  • 23pancreas
  • 11embryo
  • 10epithelium
  • 9connective tissue
  • 7spleen
  • 6liver
  • 4adipose tissue
  • 2blood
  • 2bodily fluid
  • 2brain
Project
  • 75AMP
  • 1HPAP
Genome assembly (visualization)
  • 56GRCh38
  • 51hg19
  • 5hg18
Lab
  • 75AMP-T2D consortium
  • 1Klaus Kaestner, Upenn
Audit category:
  • 4inconsistent ontology term
Audit category:
  • 6missing controlled_by
Audit category:
  • 6inconsistent control read length
BIOSAMPLE
ASSAY

76 results

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Clear Filters
ChIP-seq
single cell RNA-seq
WGBS
GRO-seq
ATAC-seq
DNase-seq
tissue
body of pancreas13
spleen7
right lobe of liver4
adipose tissue3
islet of Langerhans2
in vitro differentiated cells
pancreatic endoderm61
adipocyte5
Hepatic endoderm4
Posterior foregut21
definitive endodermal cell21
primary cell
mesenchymal cell3
pancreatic cell2
Langerhans cell1
pancreatic acinar cell1
pancreatic alpha cell1
cell line
GM128782
stem cell
hESC1
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