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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 101ChIP-seq
  • 37single cell RNA-seq
  • 6WGBS
  • 5GRO-seq
  • 2ATAC-seq
  • 2DNase-seq
Assay category
  • 101DNA binding
  • 37Transcription
  • 6DNA methylation
  • 4DNA accessibility
Target of assay
  • 58transcription factor
  • 57histone
  • 57histone modification
  • RNA binding protein
  • 30broad histone mark
  • 27narrow histone mark
  • 20chromatin remodeller
  • 20control
Date released
  • 50December, 2017
  • 21April, 2018
  • 20October, 2018
  • 12August, 2017
  • 11July, 2018
  • 11November, 2018
  • 8January, 2019
  • 7November, 2017
  • 5January, 2018
  • 2December, 2018
  • 1August, 2018
  • 1June, 2018
  • 1March, 2019
  • 1October, 2017
  • 1September, 2018
  • 1September, 2020
Available data
  • 152fastq
  • 143bam
  • 126bigWig
  • 77bed narrowPeak
  • 54bigBed narrowPeak
  • 34tsv
  • 17bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3bed broadPeak
  • 2bigBed broadPeak
  • 2csv
  • 1zippedFastqFolder
Organism
  • 153Homo sapiens
Biosample type
  • 50in vitro differentiated cells
  • 46tissue
  • 37primary cell
  • 16cell line
  • 4stem cell
Organ
  • 50pancreas
  • 43epithelium
  • 33liver
  • 14embryo
  • 9connective tissue
  • 7spleen
  • 5blood
  • 5bodily fluid
  • 4adipose tissue
  • 2brain
Project
  • 152AMP
  • 1HPAP
Genome assembly (visualization)
  • 125GRCh38
  • 121hg19
  • 5hg18
Lab
  • 151AMP-T2D consortium
  • 1Klaus Kaestner, Upenn
  • 1Mark McCarthy, Oxford
Audit category:
  • 4inconsistent ontology term
  • 1inconsistent control
Audit category:
  • 11missing controlled_by
Audit category:
  • 19inconsistent control read length
  • 5inconsistent control run_type
target.investigated_as!
  • RNA binding protein
BIOSAMPLE
ASSAY

153 results

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Clear Filters
ChIP-seq
single cell RNA-seq
WGBS
GRO-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
hepatocyte13
pancreatic endoderm91
Posterior foregut51
definitive endodermal cell51
primitive gut cell51
tissue
body of pancreas19
spleen7
right lobe of liver6
adipose tissue3
islet of Langerhans21
primary cell
pancreatic alpha cell6
pancreatic beta cell6
pancreatic cell6
pancreatic delta cell5
pancreatic polypeptide-secreting cell5
cell line
HepG211
GM128785
stem cell
hESC31
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