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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 106ChIP-seq
  • 37single cell RNA-seq
  • 6WGBS
  • 5GRO-seq
  • 2ATAC-seq
  • 2DNase-seq
Assay category
  • 106DNA binding
  • 37Transcription
  • 6DNA methylation
  • 4DNA accessibility
Target of assay
  • 58transcription factor
  • 57histone
  • 57histone modification
  • 35RNA binding protein
  • broad histone mark
  • 27narrow histone mark
  • 20chromatin remodeller
  • 20control
Date released
  • 37December, 2017
  • 24November, 2018
  • 22November, 2017
  • 21April, 2018
  • 12August, 2017
  • 11July, 2018
  • 10October, 2018
  • 8January, 2019
  • 5January, 2018
  • 2December, 2018
  • 1August, 2018
  • 1June, 2018
  • 1March, 2019
  • 1October, 2017
  • 1September, 2018
  • 1September, 2020
Available data
  • 157fastq
  • 148bam
  • 130bigWig
  • 81bed narrowPeak
  • 63bigBed narrowPeak
  • 34tsv
  • 12bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3bed broadPeak
  • 2bigBed broadPeak
  • 2csv
  • 1zippedFastqFolder
Organism
  • 158Homo sapiens
Biosample type
  • 48cell line
  • 41in vitro differentiated cells
  • 37primary cell
  • 29tissue
  • 3stem cell
Organ
  • 52liver
  • 40pancreas
  • 38epithelium
  • 13embryo
  • 10blood
  • 10bodily fluid
  • 9connective tissue
  • 4adipose tissue
  • 3spleen
  • 2brain
Project
  • 157AMP
  • 1HPAP
Genome assembly (visualization)
  • 128GRCh38
  • 124hg19
  • 5hg18
Lab
  • 156AMP-T2D consortium
  • 1Klaus Kaestner, Upenn
  • 1Mark McCarthy, Oxford
Audit category:
  • 4inconsistent ontology term
  • 1inconsistent control
Audit category:
  • 13missing controlled_by
Audit category:
  • 18inconsistent control read length
  • 8inconsistent control run_type
target.investigated_as!
  • broad histone mark
BIOSAMPLE
ASSAY

158 results

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Clear Filters
ChIP-seq
single cell RNA-seq
WGBS
GRO-seq
ATAC-seq
DNase-seq
cell line
HepG238
GM1287810
in vitro differentiated cells
pancreatic endoderm81
hepatocyte8
Posterior foregut41
adipocyte5
definitive endodermal cell41
primary cell
pancreatic alpha cell6
pancreatic beta cell6
pancreatic cell6
pancreatic delta cell5
pancreatic polypeptide-secreting cell5
tissue
body of pancreas9
adipose tissue3
islet of Langerhans21
liver111
right lobe of liver3
stem cell
hESC21
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