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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 116ChIP-seq
  • 37single cell RNA-seq
  • 6WGBS
  • 5GRO-seq
  • 2ATAC-seq
  • 2DNase-seq
Assay category
  • 116DNA binding
  • 37Transcription
  • 6DNA methylation
  • 4DNA accessibility
Target of assay
  • 58transcription factor
  • 57histone
  • 57histone modification
  • 35RNA binding protein
  • 30broad histone mark
  • 27narrow histone mark
  • chromatin remodeller
  • 20control
Date released
  • 51December, 2017
  • 21April, 2018
  • 21October, 2018
  • 17November, 2018
  • 16November, 2017
  • 12August, 2017
  • 11July, 2018
  • 8January, 2019
  • 5January, 2018
  • 1August, 2018
  • 1June, 2018
  • 1March, 2019
  • 1October, 2017
  • 1September, 2018
  • 1September, 2020
Available data
  • 167fastq
  • 158bam
  • 140bigWig
  • 91bed narrowPeak
  • 68bigBed narrowPeak
  • 34tsv
  • 17bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3bed broadPeak
  • 2bigBed broadPeak
  • 2csv
  • 1zippedFastqFolder
Organism
  • 168Homo sapiens
Biosample type
  • 51in vitro differentiated cells
  • 47tissue
  • 37primary cell
  • 29cell line
  • 4stem cell
Organ
  • 51pancreas
  • 50liver
  • 44epithelium
  • 14embryo
  • 9connective tissue
  • 7spleen
  • 4adipose tissue
  • 2blood
  • 2bodily fluid
  • 2brain
Project
  • 167AMP
  • 1HPAP
Genome assembly (visualization)
  • 140GRCh38
  • 134hg19
  • 5hg18
Lab
  • 166AMP-T2D consortium
  • 1Klaus Kaestner, Upenn
  • 1Mark McCarthy, Oxford
Audit category:
  • 4inconsistent ontology term
Audit category:
  • 7missing controlled_by
Audit category:
  • 13inconsistent control read length
target.investigated_as!
  • chromatin remodeller
BIOSAMPLE
ASSAY

168 results

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Clear Filters
ChIP-seq
single cell RNA-seq
WGBS
GRO-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
hepatocyte14
pancreatic endoderm91
Posterior foregut51
definitive endodermal cell51
primitive gut cell51
tissue
body of pancreas20
spleen7
right lobe of liver6
adipose tissue3
islet of Langerhans21
primary cell
pancreatic alpha cell6
pancreatic beta cell6
pancreatic cell6
pancreatic delta cell5
pancreatic polypeptide-secreting cell5
cell line
HepG227
GM128782
stem cell
hESC31
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