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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 116ChIP-seq
  • 37single cell RNA-seq
  • 6WGBS
  • 5GRO-seq
  • 2ATAC-seq
  • 2DNase-seq
Assay category
  • 116DNA binding
  • 37Transcription
  • 6DNA methylation
  • 4DNA accessibility
Target of assay
  • 58transcription factor
  • 57histone
  • 57histone modification
  • 35RNA binding protein
  • 30broad histone mark
  • 27narrow histone mark
  • 20chromatin remodeller
  • control
Date released
  • 42December, 2017
  • 23November, 2018
  • 21April, 2018
  • 19November, 2017
  • 17October, 2018
  • 11August, 2017
  • 11January, 2019
  • 11July, 2018
  • 5January, 2018
  • 2December, 2018
  • 1August, 2018
  • 1June, 2018
  • 1March, 2019
  • 1October, 2017
  • 1September, 2018
  • 1September, 2020
Available data
  • 167fastq
  • 160bigWig
  • 158bam
  • 111bed narrowPeak
  • 88bigBed narrowPeak
  • 34tsv
  • 12bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3bed broadPeak
  • 2bigBed broadPeak
  • 2csv
  • 1zippedFastqFolder
Organism
  • 168Homo sapiens
Biosample type
  • 44cell line
  • 44in vitro differentiated cells
  • 40tissue
  • 37primary cell
  • 3stem cell
Organ
  • 57liver
  • 47pancreas
  • 42epithelium
  • 10embryo
  • 9blood
  • 9bodily fluid
  • 8connective tissue
  • 6spleen
  • 3adipose tissue
  • 2brain
Project
  • 167AMP
  • 1HPAP
Genome assembly (visualization)
  • 153GRCh38
  • 149hg19
  • 5hg18
Lab
  • 166AMP-T2D consortium
  • 1Klaus Kaestner, Upenn
  • 1Mark McCarthy, Oxford
Audit category:
  • 2inconsistent ontology term
  • 1inconsistent control
Audit category:
  • 13missing controlled_by
Audit category:
  • 23inconsistent control read length
  • 8inconsistent control run_type
target.investigated_as!
  • control
BIOSAMPLE
ASSAY

168 results

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Clear Filters
ChIP-seq
single cell RNA-seq
WGBS
GRO-seq
ATAC-seq
DNase-seq
cell line
HepG235
GM128789
in vitro differentiated cells
hepatocyte14
pancreatic endoderm71
Posterior foregut41
adipocyte5
definitive endodermal cell41
tissue
body of pancreas17
spleen6
right lobe of liver5
adipose tissue3
liver111
primary cell
pancreatic alpha cell6
pancreatic beta cell6
pancreatic cell6
pancreatic delta cell5
pancreatic polypeptide-secreting cell5
stem cell
hESC21
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