Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 79ChIP-seq
  • 37single cell RNA-seq
  • 6WGBS
  • 5GRO-seq
  • 2ATAC-seq
  • 2DNase-seq
Assay category
  • 79DNA binding
  • 37Transcription
  • 6DNA methylation
  • 4DNA accessibility
Target of assay
  • 58transcription factor
  • 57histone
  • histone modification
  • 35RNA binding protein
  • 30broad histone mark
  • 27narrow histone mark
  • 20chromatin remodeller
  • 20control
Date released
  • 24November, 2018
  • 21April, 2018
  • 21December, 2017
  • 21November, 2017
  • 11July, 2018
  • 10August, 2017
  • 5January, 2018
  • 5January, 2019
  • 5October, 2018
  • 2December, 2018
  • 1August, 2018
  • 1June, 2018
  • 1March, 2019
  • 1October, 2017
  • 1September, 2018
  • 1September, 2020
Available data
  • 130fastq
  • 121bam
  • 104bigWig
  • 55bed narrowPeak
  • 46bigBed narrowPeak
  • 34tsv
  • 7bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3bed broadPeak
  • 2bigBed broadPeak
  • 2csv
  • 1zippedFastqFolder
Organism
  • 131Homo sapiens
Biosample type
  • 46cell line
  • 37primary cell
  • 28in vitro differentiated cells
  • 18tissue
  • 2stem cell
Organ
  • 43liver
  • 34pancreas
  • 31epithelium
  • 9blood
  • 9bodily fluid
  • 9connective tissue
  • 8embryo
  • 4adipose tissue
  • 2brain
  • 1spleen
Project
  • 130AMP
  • 1HPAP
Genome assembly (visualization)
  • 102GRCh38
  • 98hg19
  • 5hg18
Lab
  • 129AMP-T2D consortium
  • 1Klaus Kaestner, Upenn
  • 1Mark McCarthy, Oxford
Audit category:
  • 2inconsistent ontology term
  • 1inconsistent control
Audit category:
  • 11missing controlled_by
Audit category:
  • 14inconsistent control read length
  • 8inconsistent control run_type
target.investigated_as!
  • histone modification
BIOSAMPLE
ASSAY

131 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
single cell RNA-seq
WGBS
GRO-seq
ATAC-seq
DNase-seq
cell line
HepG237
GM128789
primary cell
pancreatic alpha cell6
pancreatic beta cell6
pancreatic cell6
pancreatic delta cell5
pancreatic polypeptide-secreting cell5
in vitro differentiated cells
pancreatic endoderm51
adipocyte5
Posterior foregut31
definitive endodermal cell31
primitive gut cell31
tissue
body of pancreas4
adipose tissue3
islet of Langerhans11
liver11
pancreas2
stem cell
hESC11
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego