Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 109ChIP-seq
  • 37single cell RNA-seq
  • 6WGBS
  • 5GRO-seq
  • 2ATAC-seq
  • 2DNase-seq
Assay category
  • 109DNA binding
  • 37Transcription
  • 6DNA methylation
  • 4DNA accessibility
Target of assay
  • 58transcription factor
  • 57histone
  • 57histone modification
  • 35RNA binding protein
  • 30broad histone mark
  • narrow histone mark
  • 20chromatin remodeller
  • 20control
Date released
  • 36December, 2017
  • 24November, 2018
  • 21April, 2018
  • 21November, 2017
  • 16October, 2018
  • 11July, 2018
  • 10August, 2017
  • 9January, 2019
  • 5January, 2018
  • 2December, 2018
  • 1August, 2018
  • 1June, 2018
  • 1March, 2019
  • 1October, 2017
  • 1September, 2018
  • 1September, 2020
Available data
  • 160fastq
  • 151bam
  • 134bigWig
  • 85bed narrowPeak
  • 71bigBed narrowPeak
  • 34tsv
  • 12bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3bed broadPeak
  • 2bigBed broadPeak
  • 2csv
  • 1zippedFastqFolder
Organism
  • 161Homo sapiens
Biosample type
  • 46cell line
  • 39in vitro differentiated cells
  • 37primary cell
  • 36tissue
  • 3stem cell
Organ
  • 53liver
  • 45pancreas
  • 38epithelium
  • 9blood
  • 9bodily fluid
  • 9connective tissue
  • 9embryo
  • 5spleen
  • 4adipose tissue
  • 2brain
Project
  • 160AMP
  • 1HPAP
Genome assembly (visualization)
  • 132GRCh38
  • 128hg19
  • 5hg18
Lab
  • 159AMP-T2D consortium
  • 1Klaus Kaestner, Upenn
  • 1Mark McCarthy, Oxford
Audit category:
  • 2inconsistent ontology term
  • 1inconsistent control
Audit category:
  • 11missing controlled_by
Audit category:
  • 19inconsistent control read length
  • 8inconsistent control run_type
target.investigated_as!
  • narrow histone mark
BIOSAMPLE
ASSAY

161 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
single cell RNA-seq
WGBS
GRO-seq
ATAC-seq
DNase-seq
cell line
HepG237
GM128789
in vitro differentiated cells
hepatocyte10
pancreatic endoderm61
Posterior foregut41
adipocyte5
definitive endodermal cell41
primary cell
pancreatic alpha cell6
pancreatic beta cell6
pancreatic cell6
pancreatic delta cell5
pancreatic polypeptide-secreting cell5
tissue
body of pancreas15
spleen5
right lobe of liver4
adipose tissue3
islet of Langerhans11
stem cell
hESC21
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego