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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 75ChIP-seq
  • 23ATAC-seq
  • 23single cell RNA-seq
  • 22total RNA-seq
  • 6DNase-seq
  • 1pCHi-C
Assay category
  • 75DNA binding
  • 45Transcription
  • 29DNA accessibility
Target of assay
  • 54transcription factor
  • 18control
  • 12RNA binding protein
  • 1chromatin remodeller
Date released
  • 38September, 2020
  • 29December, 2018
  • 24May, 2022
  • 20October, 2018
  • 13November, 2018
  • 9November, 2017
  • 6January, 2019
  • 4December, 2017
  • 3October, 2017
  • 2August, 2017
  • 1August, 2018
  • 1July, 2018
Available data
  • 150fastq
  • 111bam
  • 86bed narrowPeak
  • 69bigWig
  • 65bigBed narrowPeak
  • 6bed bed3+
  • 6bed broadPeak
  • 6bigBed broadPeak
  • 6txt
  • 1bedpe bed3+
  • 1tsv
  • 1zippedFastqFolder
Organism
  • 150Homo sapiens
Biosample type
  • 66tissue
  • 44cell line
  • 39primary cell
  • 1in vitro differentiated cells
Organ
  • 55pancreas
  • 34blood
  • 34bodily fluid
  • 17epithelium
  • 17liver
  • 13adipose tissue
  • 13connective tissue
  • 9spleen
Project
  • 112AMP
  • 38HPAP
Genome assembly (visualization)
  • 87hg19
  • 69GRCh38
Lab
  • 88AMP-T2D consortium
  • 38Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
files.platform.term_name!
  • Illumina HiSeq 2000
BIOSAMPLE
ASSAY

150 results

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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
DNase-seq
pCHi-C
tissue
islet of Langerhans186
body of pancreas1112
spleen711
omental fat pad611
right lobe of liver411
cell line
GM1287834
HepG210
primary cell
Langerhans cell22
pancreatic alpha cell115
pancreatic beta cell1
in vitro differentiated cells
white fat cell1
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