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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 77ChIP-seq
  • 23ATAC-seq
  • 23single cell RNA-seq
  • 22total RNA-seq
  • 3DNase-seq
  • 1pCHi-C
Assay category
  • 77DNA binding
  • 45Transcription
  • 26DNA accessibility
Target of assay
  • 56transcription factor
  • 18control
  • 12RNA binding protein
  • 1chromatin remodeller
Date released
  • 38September, 2020
  • 29December, 2018
  • 24May, 2022
  • 20October, 2018
  • 11November, 2018
  • 10November, 2017
  • 6January, 2019
  • 4December, 2017
  • 3October, 2017
  • 2August, 2017
  • 1August, 2018
  • 1July, 2018
Available data
  • 149fastq
  • 110bam
  • 85bed narrowPeak
  • 68bigWig
  • 64bigBed narrowPeak
  • 6txt
  • 3bed bed3+
  • 3bed broadPeak
  • 3bigBed broadPeak
  • 1bedpe bed3+
  • 1tsv
  • 1zippedFastqFolder
Organism
  • 149Homo sapiens
Biosample type
  • 63tissue
  • 46cell line
  • 39primary cell
  • 1in vitro differentiated cells
Organ
  • 54pancreas
  • 35blood
  • 35bodily fluid
  • 18liver
  • 17epithelium
  • 12adipose tissue
  • 12connective tissue
  • 8spleen
Project
  • 111AMP
  • 38HPAP
Genome assembly (visualization)
  • 86hg19
  • 68GRCh38
Lab
  • 87AMP-T2D consortium
  • 38Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
files.platform.term_name!
  • Illumina NextSeq 500
BIOSAMPLE
ASSAY

149 results

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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
DNase-seq
pCHi-C
tissue
islet of Langerhans186
body of pancreas1111
spleen71
omental fat pad61
right lobe of liver411
cell line
GM1287835
HepG211
primary cell
Langerhans cell22
pancreatic alpha cell115
pancreatic beta cell1
in vitro differentiated cells
white fat cell1
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