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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
23
ATAC-seq
23
single cell RNA-seq
22
total RNA-seq
6
DNase-seq
1
pCHi-C
Assay category
74
DNA binding
45
Transcription
29
DNA accessibility
Target of assay
53
transcription factor
18
control
11
RNA binding protein
1
chromatin remodeller
Date released
38
September, 2020
29
December, 2018
24
May, 2022
20
October, 2018
11
November, 2018
10
November, 2017
6
January, 2019
4
December, 2017
3
October, 2017
2
August, 2017
1
August, 2018
1
July, 2018
Available data
149
fastq
110
bam
85
bed narrowPeak
68
bigWig
64
bigBed narrowPeak
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
6
txt
1
bedpe bed3+
1
tsv
1
zippedFastqFolder
Organism
149
Homo sapiens
Biosample type
66
tissue
43
cell line
39
primary cell
1
in vitro differentiated cells
Organ
55
pancreas
33
blood
33
bodily fluid
17
epithelium
17
liver
13
adipose tissue
13
connective tissue
9
spleen
Project
111
AMP
38
HPAP
Genome assembly (visualization)
86
hg19
68
GRCh38
Lab
87
AMP-T2D consortium
38
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
files.read_length!
101
BIOSAMPLE
ASSAY
149 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
DNase-seq
pCHi-C
tissue
islet of Langerhans
18
6
body of pancreas
11
1
2
spleen
7
1
1
omental fat pad
6
1
1
right lobe of liver
4
1
1
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cell line
GM12878
33
HepG2
10
primary cell
Langerhans cell
22
pancreatic alpha cell
1
15
pancreatic beta cell
1
in vitro differentiated cells
white fat cell
1
See all biosamples
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