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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ChIP-seq
23
ATAC-seq
22
total RNA-seq
6
DNase-seq
1
pCHi-C
1
single cell RNA-seq
Assay category
77
DNA binding
29
DNA accessibility
23
Transcription
Target of assay
56
transcription factor
18
control
12
RNA binding protein
1
chromatin remodeller
Date released
29
December, 2018
24
May, 2022
20
October, 2018
16
September, 2020
14
November, 2018
10
November, 2017
6
January, 2019
4
December, 2017
3
October, 2017
2
August, 2017
1
August, 2018
1
July, 2018
Available data
130
fastq
113
bam
88
bed narrowPeak
71
bigWig
67
bigBed narrowPeak
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
6
txt
1
bedpe bed3+
1
tsv
Organism
130
Homo sapiens
Biosample type
66
tissue
46
cell line
17
primary cell
1
in vitro differentiated cells
Organ
55
pancreas
35
blood
35
bodily fluid
18
liver
17
epithelium
13
adipose tissue
13
connective tissue
9
spleen
Project
114
AMP
16
HPAP
Genome assembly (visualization)
89
hg19
71
GRCh38
Lab
90
AMP-T2D consortium
24
Kyle Gaulton, UCSD
16
Klaus Kaestner, Upenn
files.run_type!
unknown
BIOSAMPLE
ASSAY
130 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
single cell RNA-seq
tissue
islet of Langerhans
18
6
body of pancreas
11
1
2
spleen
7
1
1
omental fat pad
6
1
1
right lobe of liver
4
1
1
+ See 2 more…
cell line
GM12878
35
HepG2
11
primary cell
pancreatic alpha cell
15
1
pancreatic beta cell
1
in vitro differentiated cells
white fat cell
1
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