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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 77ChIP-seq
  • 23single cell RNA-seq
  • 16total RNA-seq
  • 6DNase-seq
  • 5ATAC-seq
  • 1pCHi-C
Assay category
  • 77DNA binding
  • 39Transcription
  • 11DNA accessibility
Target of assay
  • 56transcription factor
  • 18control
  • 12RNA binding protein
  • 1chromatin remodeller
Date released
  • 38September, 2020
  • 29December, 2018
  • 20October, 2018
  • 14November, 2018
  • 10November, 2017
  • 6January, 2019
  • 4December, 2017
  • 3October, 2017
  • 2August, 2017
  • 1August, 2018
  • 1July, 2018
Available data
  • 128fastq
  • 89bam
  • 71bigWig
  • 70bed narrowPeak
  • 67bigBed narrowPeak
  • 6bed bed3+
  • 6bed broadPeak
  • 6bigBed broadPeak
  • 1bedpe bed3+
  • 1tsv
  • 1zippedFastqFolder
Organism
  • 128Homo sapiens
Biosample type
  • 46cell line
  • 42tissue
  • 39primary cell
  • 1in vitro differentiated cells
Organ
  • 35blood
  • 35bodily fluid
  • 31pancreas
  • 18liver
  • 17epithelium
  • 13adipose tissue
  • 13connective tissue
  • 9spleen
Project
  • 90AMP
  • 38HPAP
Genome assembly (visualization)
  • 71GRCh38
  • 71hg19
Lab
  • 90AMP-T2D consortium
  • 38Klaus Kaestner, Upenn
  • Kyle Gaulton, UCSD
lab.title!
  • Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY

128 results

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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
DNase-seq
ATAC-seq
pCHi-C
cell line
GM1287835
HepG211
tissue
body of pancreas1121
spleen711
omental fat pad611
right lobe of liver411
subcutaneous adipose tissue31
primary cell
Langerhans cell22
pancreatic alpha cell115
pancreatic beta cell1
in vitro differentiated cells
white fat cell1
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