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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ChIP-seq
23
single cell RNA-seq
16
total RNA-seq
6
DNase-seq
5
ATAC-seq
1
pCHi-C
Assay category
77
DNA binding
39
Transcription
11
DNA accessibility
Target of assay
56
transcription factor
18
control
12
RNA binding protein
1
chromatin remodeller
Date released
38
September, 2020
29
December, 2018
20
October, 2018
14
November, 2018
10
November, 2017
6
January, 2019
4
December, 2017
3
October, 2017
2
August, 2017
1
August, 2018
1
July, 2018
Available data
128
fastq
89
bam
71
bigWig
70
bed narrowPeak
67
bigBed narrowPeak
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
1
bedpe bed3+
1
tsv
1
zippedFastqFolder
Organism
128
Homo sapiens
Biosample type
46
cell line
42
tissue
39
primary cell
1
in vitro differentiated cells
Organ
35
blood
35
bodily fluid
31
pancreas
18
liver
17
epithelium
13
adipose tissue
13
connective tissue
9
spleen
Project
90
AMP
38
HPAP
Genome assembly (visualization)
71
GRCh38
71
hg19
Lab
90
AMP-T2D consortium
38
Klaus Kaestner, Upenn
Kyle Gaulton, UCSD
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
128 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
DNase-seq
ATAC-seq
pCHi-C
cell line
GM12878
35
HepG2
11
tissue
body of pancreas
11
2
1
spleen
7
1
1
omental fat pad
6
1
1
right lobe of liver
4
1
1
subcutaneous adipose tissue
3
1
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primary cell
Langerhans cell
22
pancreatic alpha cell
1
15
pancreatic beta cell
1
in vitro differentiated cells
white fat cell
1
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