Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 48ChIP-seq
  • 23ATAC-seq
  • 23single cell RNA-seq
  • 22total RNA-seq
  • 6DNase-seq
  • 1pCHi-C
Assay category
  • 48DNA binding
  • 45Transcription
  • 29DNA accessibility
Target of assay
  • 33transcription factor
  • 14control
  • 10RNA binding protein
  • 1chromatin remodeller
Date released
  • 38September, 2020
  • December, 2018
  • 24May, 2022
  • 20October, 2018
  • 14November, 2018
  • 10November, 2017
  • 6January, 2019
  • 4December, 2017
  • 3October, 2017
  • 2August, 2017
  • 1August, 2018
  • 1July, 2018
Available data
  • 123fastq
  • 84bam
  • 63bed narrowPeak
  • 46bigWig
  • 42bigBed narrowPeak
  • 6bed bed3+
  • 6bed broadPeak
  • 6bigBed broadPeak
  • 6txt
  • 1bedpe bed3+
  • 1tsv
  • 1zippedFastqFolder
Organism
  • 123Homo sapiens
Biosample type
  • 59tissue
  • 39primary cell
  • 24cell line
  • 1in vitro differentiated cells
Organ
  • 55pancreas
  • 18liver
  • 17epithelium
  • 13adipose tissue
  • 13blood
  • 13bodily fluid
  • 13connective tissue
  • 2spleen
Project
  • 85AMP
  • 38HPAP
Genome assembly (visualization)
  • 64hg19
  • 46GRCh38
Lab
  • 61AMP-T2D consortium
  • 38Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
month_released!
  • December, 2018
BIOSAMPLE
ASSAY

123 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
DNase-seq
pCHi-C
tissue
islet of Langerhans186
body of pancreas1112
omental fat pad611
right lobe of liver411
subcutaneous adipose tissue31
primary cell
Langerhans cell22
pancreatic alpha cell115
pancreatic beta cell1
cell line
GM1287813
HepG211
in vitro differentiated cells
white fat cell1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego