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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
71
ChIP-seq
23
ATAC-seq
23
single cell RNA-seq
22
total RNA-seq
6
DNase-seq
1
pCHi-C
Assay category
71
DNA binding
45
Transcription
29
DNA accessibility
Target of assay
50
transcription factor
18
control
12
RNA binding protein
Date released
38
September, 2020
29
December, 2018
24
May, 2022
20
October, 2018
14
November, 2018
10
November, 2017
January, 2019
4
December, 2017
3
October, 2017
2
August, 2017
1
August, 2018
1
July, 2018
Available data
146
fastq
107
bam
82
bed narrowPeak
65
bigWig
61
bigBed narrowPeak
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
6
txt
1
bedpe bed3+
1
tsv
1
zippedFastqFolder
Organism
146
Homo sapiens
Biosample type
66
tissue
40
cell line
39
primary cell
1
in vitro differentiated cells
Organ
55
pancreas
29
blood
29
bodily fluid
18
liver
17
epithelium
13
adipose tissue
13
connective tissue
9
spleen
Project
108
AMP
38
HPAP
Genome assembly (visualization)
83
hg19
65
GRCh38
Lab
84
AMP-T2D consortium
38
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
month_released!
January, 2019
BIOSAMPLE
ASSAY
146 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
DNase-seq
pCHi-C
tissue
islet of Langerhans
18
6
body of pancreas
11
1
2
spleen
7
1
1
omental fat pad
6
1
1
right lobe of liver
4
1
1
+ See 2 more…
cell line
GM12878
29
HepG2
11
primary cell
Langerhans cell
22
pancreatic alpha cell
1
15
pancreatic beta cell
1
in vitro differentiated cells
white fat cell
1
See all biosamples
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