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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 69ChIP-seq
  • 23ATAC-seq
  • 23single cell RNA-seq
  • 22total RNA-seq
  • 1pCHi-C
Assay category
  • 69DNA binding
  • 45Transcription
  • 23DNA accessibility
Target of assay
  • 49transcription factor
  • 17control
  • 11RNA binding protein
  • 1chromatin remodeller
Date released
  • 38September, 2020
  • 29December, 2018
  • 24May, 2022
  • 20October, 2018
  • November, 2018
  • 10November, 2017
  • 6January, 2019
  • 4December, 2017
  • 3October, 2017
  • 2August, 2017
  • 1August, 2018
  • 1July, 2018
Available data
  • 138fastq
  • 99bam
  • 75bed narrowPeak
  • 58bigWig
  • 54bigBed narrowPeak
  • 6txt
  • 1bedpe bed3+
  • 1tsv
  • 1zippedFastqFolder
Organism
  • 138Homo sapiens
Biosample type
  • 60tissue
  • 39primary cell
  • 38cell line
  • 1in vitro differentiated cells
Organ
  • 53pancreas
  • 28blood
  • 28bodily fluid
  • 17epithelium
  • 15liver
  • 12adipose tissue
  • 12connective tissue
  • 8spleen
Project
  • 100AMP
  • 38HPAP
Genome assembly (visualization)
  • 76hg19
  • 58GRCh38
Lab
  • 76AMP-T2D consortium
  • 38Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
month_released!
  • November, 2018
BIOSAMPLE
ASSAY

138 results

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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
pCHi-C
tissue
islet of Langerhans186
body of pancreas111
spleen71
omental fat pad61
right lobe of liver41
primary cell
Langerhans cell22
pancreatic alpha cell115
pancreatic beta cell1
cell line
GM1287828
HepG210
in vitro differentiated cells
white fat cell1
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