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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 57ChIP-seq
  • 23ATAC-seq
  • 23single cell RNA-seq
  • 22total RNA-seq
  • 6DNase-seq
  • 1pCHi-C
Assay category
  • 57DNA binding
  • 45Transcription
  • 29DNA accessibility
Target of assay
  • 46transcription factor
  • 8control
  • 6RNA binding protein
  • 1chromatin remodeller
Date released
  • 38September, 2020
  • 29December, 2018
  • 24May, 2022
  • October, 2018
  • 14November, 2018
  • 10November, 2017
  • 6January, 2019
  • 4December, 2017
  • 3October, 2017
  • 2August, 2017
  • 1August, 2018
  • 1July, 2018
Available data
  • 132fastq
  • 93bam
  • 78bed narrowPeak
  • 61bigWig
  • 57bigBed narrowPeak
  • 6bed bed3+
  • 6bed broadPeak
  • 6bigBed broadPeak
  • 6txt
  • 1bedpe bed3+
  • 1tsv
  • 1zippedFastqFolder
Organism
  • 132Homo sapiens
Biosample type
  • 46cell line
  • 46tissue
  • 39primary cell
  • 1in vitro differentiated cells
Organ
  • 44pancreas
  • 35blood
  • 35bodily fluid
  • 18liver
  • 17epithelium
  • 9spleen
  • 4adipose tissue
  • 4connective tissue
Project
  • 94AMP
  • 38HPAP
Genome assembly (visualization)
  • 79hg19
  • 61GRCh38
Lab
  • 70AMP-T2D consortium
  • 38Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
month_released!
  • October, 2018
BIOSAMPLE
ASSAY

132 results

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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
DNase-seq
pCHi-C
cell line
GM1287835
HepG211
tissue
islet of Langerhans186
spleen711
right lobe of liver411
body of pancreas12
omental fat pad11
primary cell
Langerhans cell22
pancreatic alpha cell115
pancreatic beta cell1
in vitro differentiated cells
white fat cell1
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