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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 42ChIP-seq
  • 23ATAC-seq
  • 23single cell RNA-seq
  • 22total RNA-seq
  • 6DNase-seq
  • 1pCHi-C
Assay category
  • 45Transcription
  • 42DNA binding
  • 29DNA accessibility
Target of assay
  • 24transcription factor
  • 17control
  • 9RNA binding protein
Date released
  • 38September, 2020
  • 24May, 2022
  • 20October, 2018
  • 10November, 2017
  • 7December, 2018
  • 7November, 2018
  • 4December, 2017
  • 3October, 2017
  • 2August, 2017
  • 1August, 2018
  • 1July, 2018
Available data
  • 117fastq
  • 78bam
  • 54bed narrowPeak
  • 37bigWig
  • 33bigBed narrowPeak
  • 6bed bed3+
  • 6bed broadPeak
  • 6bigBed broadPeak
  • 6txt
  • 1bedpe bed3+
  • 1tsv
  • 1zippedFastqFolder
Organism
  • 117Homo sapiens
Biosample type
  • 66tissue
  • 39primary cell
  • 11cell line
  • 1in vitro differentiated cells
Organ
  • 55pancreas
  • 35blood
  • bodily fluid
  • 18liver
  • 17epithelium
  • 13adipose tissue
  • 13connective tissue
  • 9spleen
Project
  • 79AMP
  • 38HPAP
Genome assembly (visualization)
  • 55hg19
  • 37GRCh38
Lab
  • 55AMP-T2D consortium
  • 38Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
organ_slims!
  • bodily fluid
BIOSAMPLE
ASSAY

117 results

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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
DNase-seq
pCHi-C
tissue
islet of Langerhans186
body of pancreas1112
spleen711
omental fat pad611
right lobe of liver411
primary cell
Langerhans cell22
pancreatic alpha cell115
pancreatic beta cell1
cell line
HepG211
in vitro differentiated cells
white fat cell1
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